Scaffold Ga0209188_1000003

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000003
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 345369
• Total Scaffold Genes: 420
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 279 (66.43%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001008	Metagenome / Metatranscriptome	807	Y
F002977	Metagenome / Metatranscriptome	516	Y
F011665	Metagenome / Metatranscriptome	288	Y
F015338	Metagenome / Metatranscriptome	255	Y
F018716	Metagenome / Metatranscriptome	233	Y
F019762	Metagenome / Metatranscriptome	228	Y
F020170	Metagenome / Metatranscriptome	225	Y
F048089	Metagenome / Metatranscriptome	148	Y
F071946	Metagenome / Metatranscriptome	121	Y
F072324	Metagenome / Metatranscriptome	121	Y
F076100	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_1000003107	F020170	AGG	MSKHVEPSPEQNEESHERLMLAFREYFKANQNWQSRGSRRAGENMRYWLAQIRIIAKERRGHVQQYRMWLDKDKAAKKENQKAQSEDPDNTN
Ga0209188_1000003136	F015338	GGA	MAIKNGKPNPLNYFNLRRVDFACPHFKYSTIDKYTPTLVKSLDSWIRKNLNNRYYIGQDVSLDNTNTIVYVTRIGFESEKELSFFTIACPLLQTR
Ga0209188_1000003141	F011665	N/A	MSNQINLTPITQFAQVLRAAELTQSKEIKMPIQQARLLNLALLEIQDKLLQDYTALFLELKNSSETEVITVSMDGGGFKDK
Ga0209188_1000003152	F002977	N/A	MKYQTPAEGILKTNEWGDSKVYRVVCECTDSQHDHNVWVEADANEISVTIYATVKSNFWSKTRWYHIWSLLSKGYIDTETTLILRKQGALNYAETLKSAIQDVEDFRKR
Ga0209188_1000003153	F076100	GAG	MKYITNKFDNVRFPVEPGLLEWLRENYPASKYIIKEIK
Ga0209188_1000003155	F018716	N/A	MQDLTIKILWDNQSVVWWNECCASVLEVFGLPGHRFVYKPYEDYMTFTFKNQKDYNLCQILLSEHIRA
Ga0209188_1000003158	F019762	AGGAG	MKELHESVAVTAKEMTIKQSEGFRVRMEKHEVLSPKGLYSLDLIQENLKDGKVIDSQTYNFFMTKSELNTLAYALTL
Ga0209188_10000032	F072324	AGGAG	MLEVTQFANNSFHAQNSDVRNCEAIVFAESVRSGRTMLQVINYVLEEDDSDTNLLCACETLQETIVNAYKKQIISEYLDNLLYENNK
Ga0209188_1000003251	F001008	GAG	MSKAKHKPHQWIDGETADRITSLNLKDYRAYLKKELKQWKKNPKSDTNPDGYWLHPEDVGLNMQTIAALDLIIDHFVVTEDEK
Ga0209188_10000033	F071946	AGGAG	MYDIVKNPIPKTGLFATPESFEQLMEYCQRFSGQERIIAITVATMALNLAHNVVEKEILSKEIFAQ
Ga0209188_1000003304	F048089	AGG	MKPGKTFKLSKTTKRMIGLMKGSTAEQRNQYKNMMIDAQLCSEIVIKSAPKQRDSGARSTNAYTATDSTIA