Scaffold Ga0209581_1000116

Overview

Basic Information

• Taxon OID: 3300027706
• Scaffold ID: Ga0209581_1000116
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 257580
• Total Scaffold Genes: 219
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 173 (79.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000335	Metagenome / Metatranscriptome	1276	Y
F000451	Metagenome / Metatranscriptome	1124	Y
F002448	Metagenome / Metatranscriptome	558	Y
F007212	Metagenome / Metatranscriptome	355	Y
F050849	Metagenome	144	Y
F092767	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209581_1000116165	F050849	AGG	MQRVVELVEREAGHVLVSLVLIILGALLWLLKVPKGEDLIPFALGVLGRSMVGKSNESSR
Ga0209581_1000116170	F007212	N/A	MSDWATIGAGVNAAMMKAFGEPVVYQPVQGGFPVGDPVTITAIRHSRERAESGAVASAEEISVNPTDLPDFPQPGDWVTAWGMQFVVGPVRQPDAYGLAQLSLIARQSADDQP
Ga0209581_1000116171	F002448	N/A	MINPKTLLAEWMDALRSLPKLVEALGGNPNHIQFYSENAIVFGKPTQNNIRLAILSMPPGSILVAWQGTAPGRLGNMLVFVHEFSLYLRAPEEAEVGYEDLFNWIVNDTPPGSTIPMLHIQIDPNCEPMDFYLPSARRNTIVISADGATFEYFECPVRLIESYNS
Ga0209581_1000116179	F000451	AGG	MARFQTVVRRARFVYSPYTAEEMQGFAQVLADAIRARIQSGQNIYDQPAAPLKPGKPGRRGYPDYKSARGLQPIRDWTWSGHTLRCLKVLTANENRAVIGFLDEAMPGRRQTASQIAYYNNLRERQWGVSPRDRAAVIAAILAGRRVVSVKAA
Ga0209581_1000116182	F000335	GGA	MPGNLQPAAPNGVMPFSLCTAFTELREYAQLQDQYRDGTIQRSQLAQTSRRMFRLSKRLSASALATLYNFWVSQNGGLTPFAFYNPFDVLADQQIGSNYDPTGNNTQGRVTVVFRGNWAQVTELARSNVQALELVEVA
Ga0209581_10001163	F092767	N/A	MRGADCRQTVGMARRRTAEEIQKIVEELQASGLSHRDFCQQTGIKLSTLGRYARRARGSEQPQQLVRVKLDVPQEPGAGFVLMLGNGRRIASGWGFSDTALARLIRVAESA