Scaffold Ga0209551_1020583

Overview

Basic Information

• Taxon OID: 3300027689
• Scaffold ID: Ga0209551_1020583
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2239
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003379	Metagenome / Metatranscriptome	490	Y
F051704	Metagenome / Metatranscriptome	143	Y
F080026	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209551_10205832	F080026	AGGA	MTYSQEQMEMAHKIVFRLMEILKVCPHVDEKYRCHTTHQKAHQRCVDLMVLLAEITNLPEYITFLQNNPETKTDPFGWIVEYPPAETIIEKVVDLEEGYDYNKDV
Ga0209551_10205834	F003379	GGA	MKKIWALIMLTATAVFSGIALSKFLNWAGKQEDFFDFDLNEDIDSEQL
Ga0209551_10205835	F051704	AGGA	MHDHENIVLATGSGITEMQLMWIAMGLMAIHHIWMWWKMKKKNCNCK