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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027608 Open in IMG/M |
| Scaffold ID | Ga0208974_1009801 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3141 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (78.57%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.504638 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011646 | Metagenome / Metatranscriptome | 288 | Y |
| F022400 | Metagenome | 214 | Y |
| F029021 | Metagenome | 189 | Y |
| F034906 | Metagenome | 173 | Y |
| F072283 | Metagenome / Metatranscriptome | 121 | N |
| F103146 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208974_10098012 | F022400 | AGG | MRKTAIERSQRPTLRLVSGGREESGPALSLFGPLKVGLITMQKTNEDQVLTELLNSLERKIVELSIRSCEVLNIFLSDTEHLAKQKVSFSSIDIINE |
| Ga0208974_10098013 | F034906 | AGGTGG | MKNTHRVKAAADQAVRQRNYRRARERALTRLANDYPSLYRSYLEEEKKADEKMGKKWLDIDGNTKPTVSGSR |
| Ga0208974_10098014 | F011646 | GGAGG | MSNVLELRNGSVKRIIFYEVSDGQNIAIWGGESALEALKWYRNSPTGSKIYVQEWLTDEEDAKQVSSQIEITPIVLSTIANCMDRWV |
| Ga0208974_10098016 | F103146 | AGGAG | MAEPRYLMGDDYALNGVEGEEEEIGDAGLPDRMWEDED |
| Ga0208974_10098017 | F029021 | GAGG | MNICQFCGWEIARVDWYHRYNNKLICDNCVMDTMSEREKERSNG |
| Ga0208974_10098019 | F072283 | AGG | MQTMQDLIEAIKPILPNALVIDTDSGILIETNLELGLGGLLQTIEREGE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |