Scaffold Ga0208966_1000092

Overview

Basic Information

• Taxon OID: 3300027586
• Scaffold ID: Ga0208966_1000092
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27611
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (68.49%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003965	Metagenome / Metatranscriptome	459	Y
F006385	Metagenome / Metatranscriptome	374	Y
F007691	Metagenome / Metatranscriptome	346	Y
F009531	Metagenome / Metatranscriptome	316	Y
F018929	Metagenome / Metatranscriptome	232	Y
F022197	Metagenome / Metatranscriptome	215	Y
F024314	Metagenome / Metatranscriptome	206	Y
F027847	Metagenome / Metatranscriptome	193	Y
F031101	Metagenome	183	Y
F034575	Metagenome / Metatranscriptome	174	N
F038479	Metagenome / Metatranscriptome	166	Y
F056558	Metagenome / Metatranscriptome	137	Y
F084234	Metagenome / Metatranscriptome	112	Y
F095473	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208966_100009216	F024314	N/A	MNEDQKLTPEQAQVILLFQIEQKLRFVIAKQVEEKFHGSYHNASHDIAQFIRNMA
Ga0208966_100009217	F056558	N/A	MGILDNLENAWDGNFEFESKPMVNSDAMGKEIFWQDLGRPEEDQSLAVKLFSETCCTDCSCKNE
Ga0208966_100009218	F084234	AGGAG	MFDWFTNPFSVLFDWIGYFLIFGAVVTMILVIGAVVAIPLGLKLLGVAFAKTIVVETSKVIKDLGIANIDLKQQKETKQMKAYLDRKVVPILSKIS
Ga0208966_100009219	F095473	N/A	MTCQVINCDSTELVYSGTDAFMLGINTETYCYNCANAYAQINRVMSKVRQDYLDSLTPVSSLTTSD
Ga0208966_100009220	F038479	AGGTGG	MTTLTLEQKINKAAQLVAEGKVVSFRGASPATYIEVMRLANRIKQDAEFPQCPCEECI
Ga0208966_100009221	F027847	GGA	MNPFTALQDFLDENVAYGIIGAFIGVGISVALCFILGA
Ga0208966_100009222	F003965	AGGA	MNSNVIIKCVEHTPNKPAISNVADEQFTFCEICENNIERWYNDTDPERLPMWTDWKVSK
Ga0208966_100009229	F006385	AGG	MILDNGTLIAIVIALGGSLTVMCLFWKQNIAQQKEIRRLQVTLRTERLLK
Ga0208966_100009243	F009531	AGG	MTKQVAIYEMNYSCSPGGVDCWEATIQGYGTSTTGSDFKTAGEALNWVLDRYPDEMLELVVTSLPAYEKEYV
Ga0208966_100009244	F022197	N/A	MLQDYYSCDLAISITNIKAKNRHHAEAVMQTFIDEIGKIMTDELSWDDAQWDIEENVFLPELGEWHSK
Ga0208966_100009245	F007691	GAG	VNTIDDLINEIYESNFSHLEFEENMGGTDCDCHIHITLNTMAKYAGIEVG
Ga0208966_100009248	F034575	GGAGG	MENNTTLDPYLMKLVELGMDGADILHGHLKVLMVEAEAILDRCIEVEEYSEDAMDSMARTEATGYFDALCEVYALTYAIAFAKEDVKNRKEILGG
Ga0208966_100009256	F031101	GGA	MNELFWYSRQLKEAVSTTAMENGWNDAKCKEVFDELMEKYLVSKDLK
Ga0208966_100009260	F018929	GAG	MNNEEIAALLDKESYRVWDTAKVIKNQDYHDGLVKGLKMAAKYVAKL