Basic Information | |
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Taxon OID | 3300027563 Open in IMG/M |
Scaffold ID | Ga0209552_1000362 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14558 |
Total Scaffold Genes | 43 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 39 (90.70%) |
Novel Protein Genes | 12 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 11 (91.67%) |
Associated Families | 12 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000354 | Metagenome / Metatranscriptome | 1244 | Y |
F004978 | Metagenome / Metatranscriptome | 416 | Y |
F005705 | Metagenome / Metatranscriptome | 392 | Y |
F006112 | Metagenome / Metatranscriptome | 381 | Y |
F006698 | Metagenome / Metatranscriptome | 366 | Y |
F007524 | Metagenome / Metatranscriptome | 349 | Y |
F009334 | Metagenome / Metatranscriptome | 319 | Y |
F026201 | Metagenome / Metatranscriptome | 198 | Y |
F044488 | Metagenome / Metatranscriptome | 154 | Y |
F073536 | Metagenome / Metatranscriptome | 120 | Y |
F093757 | Metagenome / Metatranscriptome | 106 | Y |
F095384 | Metagenome / Metatranscriptome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209552_100036210 | F004978 | AGGAG | MITADTLEVLTDFGPLYLTRAAQDAGYRGPNFTSCKFLGITNGGQFCYMGVFQVEGGTDSTKVFLTYDHTEDRVFADVQLTDWA |
Ga0209552_100036215 | F005705 | AGGAG | MKITIKVKPKHREHIILFCAGTPFKQKVVESKVKFKRQPKHKGQHND |
Ga0209552_100036218 | F009334 | AGGAG | MKTAKVEGQTVTIGDWVGFKADIEQCGQIVEIKSSYMGQALVLENKGGFHGDYIGGETITTQEARDCWLNG |
Ga0209552_100036220 | F093757 | AGGA | MKTNKEKNIEHERKELMRVRPKQAATYDFAPLEAVIRKWITGSK |
Ga0209552_100036223 | F044488 | AGTAG | MRYGVSLSKDYLPDECVVIRDFLSVPKGRVLAIIVRDNRYEAEQSAQEIVDLLNNKHSQQ |
Ga0209552_100036224 | F073536 | N/A | MIWVQYEVWTVEQDGHEELIHTTNSLKEARTIAQASLTEQIVECIIYKEEDGELYEEEVIVKE |
Ga0209552_100036229 | F095384 | AGGAG | MFHTDNQVEFKEVLRNFTDASYKNHGSHAYAAGYLESMAVQMLALLSKREQKGFIDSMAAVVKKQREMA |
Ga0209552_100036237 | F026201 | GGAG | MQNAKQYITEDEDGYSLCINVNEKCGNYTVESIDFYVAKDADYGTSDLAVCYDISGLQNDETAQTMGTLLLRNLHSDDEVTVAMGHFYWDGAFTARLNEILAECGFANTAHTSEWGMQDEGRASYDAYDLADEIRAIMQTTTA |
Ga0209552_10003624 | F006112 | AGGAG | MKQDYTMYIYKADRRTKTGERLFSTTVWTGRTEAGMRNECNGLYWLYPATKGWRFEYLPTMKTVRNLMSGKDIQIPHDTPRSCDPSSELYWSM |
Ga0209552_100036240 | F007524 | AGGA | MRKVTKTHAVAINKLMLPLINTVAYIDEDENDFSMYKMCADDVAHNVSALCVFNNTLDAETLHNNIMLQDTLPREHFYAVLKYIEDNALINANAFCCS |
Ga0209552_100036242 | F000354 | AGGAG | MTKVNYDNFASFDINECCDHFDSEKQSNWKKIGKFIVADGQDYRHVMETEFDFEDTGDGEYEAFDAGVKYALTKMNIAFEAAGLDLQICSVDLVESMGYVMVRADDEPEDFVKRVMKKPVMMVDSWI |
Ga0209552_10003626 | F006698 | AGGAG | MRYYDELAVYERNGFDVIVDKTYEDTHPSDLFDDSEHDVKQLCQDIESGNLDWFMLRVRVMVENIELSSQYLGGCLYKDAREVLTDGVAEDLIDQALTEAKRDVYRLYKKFQDISWELDAQAA |
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