Scaffold Ga0209552_1000362

Overview

Basic Information

• Taxon OID: 3300027563
• Scaffold ID: Ga0209552_1000362
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14558
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (90.70%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F004978	Metagenome / Metatranscriptome	416	Y
F005705	Metagenome / Metatranscriptome	392	Y
F006112	Metagenome / Metatranscriptome	381	Y
F006698	Metagenome / Metatranscriptome	366	Y
F007524	Metagenome / Metatranscriptome	349	Y
F009334	Metagenome / Metatranscriptome	319	Y
F026201	Metagenome / Metatranscriptome	198	Y
F044488	Metagenome / Metatranscriptome	154	Y
F073536	Metagenome / Metatranscriptome	120	Y
F093757	Metagenome / Metatranscriptome	106	Y
F095384	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209552_100036210	F004978	AGGAG	MITADTLEVLTDFGPLYLTRAAQDAGYRGPNFTSCKFLGITNGGQFCYMGVFQVEGGTDSTKVFLTYDHTEDRVFADVQLTDWA
Ga0209552_100036215	F005705	AGGAG	MKITIKVKPKHREHIILFCAGTPFKQKVVESKVKFKRQPKHKGQHND
Ga0209552_100036218	F009334	AGGAG	MKTAKVEGQTVTIGDWVGFKADIEQCGQIVEIKSSYMGQALVLENKGGFHGDYIGGETITTQEARDCWLNG
Ga0209552_100036220	F093757	AGGA	MKTNKEKNIEHERKELMRVRPKQAATYDFAPLEAVIRKWITGSK
Ga0209552_100036223	F044488	AGTAG	MRYGVSLSKDYLPDECVVIRDFLSVPKGRVLAIIVRDNRYEAEQSAQEIVDLLNNKHSQQ
Ga0209552_100036224	F073536	N/A	MIWVQYEVWTVEQDGHEELIHTTNSLKEARTIAQASLTEQIVECIIYKEEDGELYEEEVIVKE
Ga0209552_100036229	F095384	AGGAG	MFHTDNQVEFKEVLRNFTDASYKNHGSHAYAAGYLESMAVQMLALLSKREQKGFIDSMAAVVKKQREMA
Ga0209552_100036237	F026201	GGAG	MQNAKQYITEDEDGYSLCINVNEKCGNYTVESIDFYVAKDADYGTSDLAVCYDISGLQNDETAQTMGTLLLRNLHSDDEVTVAMGHFYWDGAFTARLNEILAECGFANTAHTSEWGMQDEGRASYDAYDLADEIRAIMQTTTA
Ga0209552_10003624	F006112	AGGAG	MKQDYTMYIYKADRRTKTGERLFSTTVWTGRTEAGMRNECNGLYWLYPATKGWRFEYLPTMKTVRNLMSGKDIQIPHDTPRSCDPSSELYWSM
Ga0209552_100036240	F007524	AGGA	MRKVTKTHAVAINKLMLPLINTVAYIDEDENDFSMYKMCADDVAHNVSALCVFNNTLDAETLHNNIMLQDTLPREHFYAVLKYIEDNALINANAFCCS
Ga0209552_100036242	F000354	AGGAG	MTKVNYDNFASFDINECCDHFDSEKQSNWKKIGKFIVADGQDYRHVMETEFDFEDTGDGEYEAFDAGVKYALTKMNIAFEAAGLDLQICSVDLVESMGYVMVRADDEPEDFVKRVMKKPVMMVDSWI
Ga0209552_10003626	F006698	AGGAG	MRYYDELAVYERNGFDVIVDKTYEDTHPSDLFDDSEHDVKQLCQDIESGNLDWFMLRVRVMVENIELSSQYLGGCLYKDAREVLTDGVAEDLIDQALTEAKRDVYRLYKKFQDISWELDAQAA