NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209552_1000362

Scaffold Ga0209552_1000362


Overview

Basic Information
Taxon OID3300027563 Open in IMG/M
Scaffold IDGa0209552_1000362 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14558
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (90.70%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Associated Families12

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000354Metagenome / Metatranscriptome1244Y
F004978Metagenome / Metatranscriptome416Y
F005705Metagenome / Metatranscriptome392Y
F006112Metagenome / Metatranscriptome381Y
F006698Metagenome / Metatranscriptome366Y
F007524Metagenome / Metatranscriptome349Y
F009334Metagenome / Metatranscriptome319Y
F026201Metagenome / Metatranscriptome198Y
F044488Metagenome / Metatranscriptome154Y
F073536Metagenome / Metatranscriptome120Y
F093757Metagenome / Metatranscriptome106Y
F095384Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0209552_100036210F004978AGGAGMITADTLEVLTDFGPLYLTRAAQDAGYRGPNFTSCKFLGITNGGQFCYMGVFQVEGGTDSTKVFLTYDHTEDRVFADVQLTDWA
Ga0209552_100036215F005705AGGAGMKITIKVKPKHREHIILFCAGTPFKQKVVESKVKFKRQPKHKGQHND
Ga0209552_100036218F009334AGGAGMKTAKVEGQTVTIGDWVGFKADIEQCGQIVEIKSSYMGQALVLENKGGFHGDYIGGETITTQEARDCWLNG
Ga0209552_100036220F093757AGGAMKTNKEKNIEHERKELMRVRPKQAATYDFAPLEAVIRKWITGSK
Ga0209552_100036223F044488AGTAGMRYGVSLSKDYLPDECVVIRDFLSVPKGRVLAIIVRDNRYEAEQSAQEIVDLLNNKHSQQ
Ga0209552_100036224F073536N/AMIWVQYEVWTVEQDGHEELIHTTNSLKEARTIAQASLTEQIVECIIYKEEDGELYEEEVIVKE
Ga0209552_100036229F095384AGGAGMFHTDNQVEFKEVLRNFTDASYKNHGSHAYAAGYLESMAVQMLALLSKREQKGFIDSMAAVVKKQREMA
Ga0209552_100036237F026201GGAGMQNAKQYITEDEDGYSLCINVNEKCGNYTVESIDFYVAKDADYGTSDLAVCYDISGLQNDETAQTMGTLLLRNLHSDDEVTVAMGHFYWDGAFTARLNEILAECGFANTAHTSEWGMQDEGRASYDAYDLADEIRAIMQTTTA
Ga0209552_10003624F006112AGGAGMKQDYTMYIYKADRRTKTGERLFSTTVWTGRTEAGMRNECNGLYWLYPATKGWRFEYLPTMKTVRNLMSGKDIQIPHDTPRSCDPSSELYWSM
Ga0209552_100036240F007524AGGAMRKVTKTHAVAINKLMLPLINTVAYIDEDENDFSMYKMCADDVAHNVSALCVFNNTLDAETLHNNIMLQDTLPREHFYAVLKYIEDNALINANAFCCS
Ga0209552_100036242F000354AGGAGMTKVNYDNFASFDINECCDHFDSEKQSNWKKIGKFIVADGQDYRHVMETEFDFEDTGDGEYEAFDAGVKYALTKMNIAFEAAGLDLQICSVDLVESMGYVMVRADDEPEDFVKRVMKKPVMMVDSWI
Ga0209552_10003626F006698AGGAGMRYYDELAVYERNGFDVIVDKTYEDTHPSDLFDDSEHDVKQLCQDIESGNLDWFMLRVRVMVENIELSSQYLGGCLYKDAREVLTDGVAEDLIDQALTEAKRDVYRLYKKFQDISWELDAQAA

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.