Scaffold Ga0209552

Basic Information
Taxon OID	3300027563 Open in IMG/M
Scaffold ID	Ga0209552_1000307 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027563 Open in IMG/M

Scaffold ID

Ga0209552_1000307 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15559
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (82.98%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

15559

Total Scaffold Genes

47 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (82.98%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002598	Metagenome / Metatranscriptome	544	Y
F017133	Metagenome / Metatranscriptome	242	Y
F024314	Metagenome / Metatranscriptome	206	Y
F056558	Metagenome / Metatranscriptome	137	Y
F084217	Metagenome / Metatranscriptome	112	N
F084234	Metagenome / Metatranscriptome	112	Y
F099300	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209552_100030712	F084217	AGG	MSDYLDYMDEVYNDLVSEFGEEITLAYHEANIAEM
Ga0209552_100030717	F002598	GAGG	MATKLYTIQDLLIGKNYRSRTRHFEGEIVSATPRPEVWYGDNTEAYLVEINARGLRNKFATIAVKVGE
Ga0209552_100030718	F000447	AGG	MGYIEIFRIDNEGAGWVDLDNATPSELLDLEIGLFQEGAI
Ga0209552_100030719	F099300	AGG	MGVMKELHLEITTCDLCYGTGWLHFGNSEDYDTESCDCNPHQLFITKEND
Ga0209552_10003073	F024314	N/A	MDEEQKLTPEQAQAILLFQIEQKLRFAIANQVETKFHGSYHNASHDIAQFIRNMA
Ga0209552_10003074	F056558	AGG	MGILDNLENAWDGNFEFESKPMVDKDAMGREVFWQDLGRPEEPNLAVKLFSETCCTDCSCKNG
Ga0209552_10003075	F084234	GAGG	LFDWFTNPFSVLFDWIGYFLIFGAVVTMILVIGAVVAIPLGLKLLGVAFAKTIVVETSKVLKDIGITNIDLKQQKDNEKMKAYLDRKVVPILTKIS
Ga0209552_10003079	F017133	GGA	MTNRIFEPFATVSDYPRGLMNLCPCGQVVLAPAKYHAGFTWWENPNKCKELFEELNK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209552_1000307

Overview

Ecosystem & Geography

Associated Families

Sequences