Scaffold Ga0209537_1001011

Overview

Basic Information

• Taxon OID: 3300027510
• Scaffold ID: Ga0209537_1001011
• Source Dataset Name: Biogas fermentation microbial communities from Germany - Plant 4 DNA1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32913
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (97.92%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location

• Location Name: Bielefeld, North Rhine-Westphalia, Germany
• Coordinates
  • Lat. (^o): 52.0385
  • Long. (^o): 8.4956
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F004383	Metagenome / Metatranscriptome	440	Y
F010099	Metagenome / Metatranscriptome	308	Y
F031138	Metagenome / Metatranscriptome	183	Y
F033857	Metagenome / Metatranscriptome	176	Y
F045124	Metagenome / Metatranscriptome	153	Y
F063807	Metagenome / Metatranscriptome	129	N
F071368	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209537_100101110	F063807	GGAGG	MTPPKTLSISAALHSRLWLLKIRRKARTLDEVIEQALDALEEQEVNNG
Ga0209537_100101121	F071368	GGGGG	MDSLPRPVTTTDVYLARIVEQNDEIIALIKTEGARPKTRRLKEPKP
Ga0209537_100101124	F045124	AGGTGG	VTDDGLRQMVYETRQDVRWIKDTLREIKEANRAQDERIDEIKARQDSQTGRDGALAAIVSMVVAFFTALASGGWFR
Ga0209537_100101128	F033857	GAGG	MVEIIDLSTLSPKPVIVRIGNGDDIEEIDLTIVPARGTLLLAQATQKHGGWDKIPDDEMIPAIAAICQQSNPKITAEWLETKLTRPQLAGLAQVVIAQAFRRWGGGQDDDQEGEAKNP
Ga0209537_100101140	F010099	GAG	MTYSQSSFWTPARIAAVIGAILLVVALAYLASLPQNQFQPADLLEPKYAADADLGYWMVDKYDPEVDVYHLLVVMQHDNGTFEWLDGDGIWLPRRAVEGTFTVIGSFDARKAHL
Ga0209537_100101144	F031138	GAGG	MTKRNSYVGHCAAACNPGAGTDAQNGTFDRILVAAAEHAAREAGLPGRADRMITCRSCGAPTASSDGICRDCADAMREERAAALGERCRIHRVRYVEDLPVSVLEEIQAEWGRC
Ga0209537_100101145	F004383	GGGGG	MTSDNLLERAFMARIRADEYREALAALQREFDERPDVIEIKRRIERCEEERRQCIEQAKAAGISKQGSFRLKVRTRKQRTVIPERFFARFGAETFVACATVAIGKAEALLGKGTFDDCCEVEVKDLGATVEYVRPEGSE
Ga0209537_100101146	F003987	GGAGG	MIPALPCGTYADSGVPAGAFYVAAFEDGDQTHHVGEYRIETVLRALRALQACGYDDVEVGSVERDGKTHLLLIGLDGEARFGDRQLGCIAVAPVEVPE