Scaffold Ga0209247_1028262

Overview

Basic Information

• Taxon OID: 3300027468
• Scaffold ID: Ga0209247_1028262
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 779
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004431	Metagenome / Metatranscriptome	438	Y
F043387	Metagenome / Metatranscriptome	156	Y
F070095	Metagenome / Metatranscriptome	123	Y
F096663	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209247_10282622	F004431	AGAAGG	MNKLTITYSLWDGAQLLGVDYTATSADEMLKVVSELQKVSKGVVAHLRKVEQN
Ga0209247_10282623	F043387	GAG	MMTKWDTIQADIADQYRHLDELEALDKINAEAISDSNIVSLDEIIEQELALDWEAYE
Ga0209247_10282624	F070095	GGAGG	MEFYIDLDYVSLYVDNLYPNGIGIDIPTWVLFGTIALIYSIKLIRRDK
Ga0209247_10282625	F096663	AGGAG	MKSQLEKEIEIKESFDQMLDDSYPDVKIGYATYTASEI