Metagenome / Metatranscriptome Family F096663

Overview

Basic Information

• Family ID: F096663
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 104
• Average Sequence Length: 43 residues
• Representative Sequence: MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDP
• Number of Associated Samples: 91
• Number of Associated Scaffolds: 104

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 93.62 %
• % of genes near scaffold ends (potentially truncated): 44.23 %
• % of genes from short scaffolds (< 2000 bps): 40.38 %
• Associated GOLD sequencing projects: 87
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (76.923 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine (22.115 % of family members)
• Environment Ontology (ENVO): Unclassified (52.885 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (58.654 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 34.72%
  β-sheet: 8.33%
  Coil/Unstructured: 56.94%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF04488	Gly_transf_sug	0.96
PF01391	Collagen	0.96
PF01464	SLT	0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3774	Mannosyltransferase OCH1 or related enzyme	Cell wall/membrane/envelope biogenesis [M]	0.96

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.92 %
All Organisms	root	All Organisms	23.08 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.92 %
Viruses	superkingdom	All Organisms → Viruses	22.12 %
cellular organisms	root	All Organisms → cellular organisms	0.96 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.46 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	8.65 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.96 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.46 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	8.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.46 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	8.65 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.46 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	8.65 %
Neisseriales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales	0.96 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.46 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	8.65 %
Neisseriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae	0.96 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.46 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	8.65 %
Eikenella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Eikenella	0.96 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.46 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	8.65 %
unclassified Eikenella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Eikenella → unclassified Eikenella	0.96 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	13.46 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	8.65 %
Eikenella sp. HMSC061C02	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Eikenella → unclassified Eikenella → Eikenella sp. HMSC061C02	0.96 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300003393|JGI25909J50240_1072783	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	693
3300003499|JGI25930J51415_1030502	Not Available	975
3300004792|Ga0007761_11363718	Not Available	515
3300005517|Ga0070374_10119522	All Organisms → Viruses → Predicted Viral	1371
3300005582|Ga0049080_10018358	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2438
3300005584|Ga0049082_10076137	All Organisms → Viruses → Predicted Viral	1177
3300007617|Ga0102897_1072727	All Organisms → Viruses → Predicted Viral	1076
3300007621|Ga0102872_1204678	Not Available	518
3300007622|Ga0102863_1141828	Not Available	707
3300007954|Ga0105739_1018908	All Organisms → Viruses → Predicted Viral	1403
3300007974|Ga0105747_1287023	Not Available	555
3300008262|Ga0114337_1186067	Not Available	861
3300008953|Ga0104241_1001518	All Organisms → Viruses → Predicted Viral	1795
3300008953|Ga0104241_1010252	Not Available	643
3300008999|Ga0102816_1027530	All Organisms → Viruses → Predicted Viral	1654
3300009152|Ga0114980_10479196	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	710
3300010354|Ga0129333_10328176	Not Available	1365
3300012663|Ga0157203_1010433	All Organisms → Viruses → Predicted Viral	1543
3300012663|Ga0157203_1049941	Not Available	567
3300012715|Ga0157599_1113661	Not Available	502
3300012731|Ga0157616_1235883	Not Available	687
3300013005|Ga0164292_10493216	Not Available	803
3300013295|Ga0170791_15321425	Not Available	548
3300019784|Ga0181359_1194286	Not Available	659
3300020141|Ga0211732_1001765	All Organisms → Viruses → Predicted Viral	1125
3300020141|Ga0211732_1001816	Not Available	581
3300020161|Ga0211726_10949541	Not Available	504
3300020493|Ga0208591_1016619	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	966
3300021963|Ga0222712_10368220	Not Available	882
3300022752|Ga0214917_10228206	Not Available	889
3300024346|Ga0244775_10003330	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	17094
3300027365|Ga0209300_1022463	All Organisms → Viruses → Predicted Viral	1373
3300027380|Ga0208432_1009891	All Organisms → Viruses → Predicted Viral	1788
3300027387|Ga0208311_1127016	Not Available	547
3300027468|Ga0209247_1028262	Not Available	779
3300027563|Ga0209552_1035064	All Organisms → Viruses → Predicted Viral	1463
3300027644|Ga0209356_1001711	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	8530
3300027689|Ga0209551_1193549	Not Available	625
3300027707|Ga0209443_1150310	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	848
3300027736|Ga0209190_1044993	Not Available	2269
3300027754|Ga0209596_1262138	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	704
3300027763|Ga0209088_10099512	All Organisms → Viruses → Predicted Viral	1335
3300027763|Ga0209088_10388694	Not Available	541
3300027797|Ga0209107_10133263	All Organisms → Viruses → Predicted Viral	1289
3300027971|Ga0209401_1002143	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	12867
3300028025|Ga0247723_1025058	All Organisms → Viruses → Predicted Viral	1949
3300028112|Ga0256335_1155399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Eikenella → unclassified Eikenella → Eikenella sp. HMSC061C02	596

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	97.12%
Terrestrial	Environmental → Terrestrial	2.88%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	67.31%
Marine	Environmental → Aquatic → Marine	29.81%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	2.88%

Type

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	30.77%
Lentic	Environmental → Aquatic → Freshwater → Lentic	29.81%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	22.12%
Coastal	Environmental → Aquatic → Marine → Coastal	5.77%
Lotic	Environmental → Aquatic → Freshwater → Lotic	2.88%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	2.88%
River	Environmental → Aquatic → Freshwater → River	1.92%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.96%
Ice	Environmental → Aquatic → Freshwater → Ice	0.96%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	30.77%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	24.04%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	22.12%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	5.77%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	3.85%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	2.88%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	2.88%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	1.92%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.96%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.96%

Habitat

Habitat	Taxonomy	Distribution
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	22.12%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	20.19%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	10.58%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	10.58%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	7.69%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	4.81%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	2.88%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	1.92%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	1.92%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	1.92%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	1.92%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	1.92%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	1.92%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment	0.96%
Lake	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake	0.96%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.96%
Freshwater And Marine	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine	0.96%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.96%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater	0.96%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.96%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.96%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.96%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.96%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental
3300000882	Freshwater microbial communities from the Columbia River	Environmental
3300001250	Freshwater microbial communities from Lake Mendota, WI - 13AUG2008 deep hole epilimnion	Environmental
3300002195	Freshwater microbial communities from San Paulo Zoo lake, Brazil - AUG 2013	Environmental
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental
3300003393	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD	Environmental
3300003430	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD	Environmental
3300003499	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN	Environmental
3300004125	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (version 2)	Environmental
3300004792	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (Metagenome Metatranscriptome)	Environmental
3300004836	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (Metagenome Metatranscriptome)	Environmental
3300005517	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)	Environmental
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental
3300005584	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF	Environmental
3300007545	Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3	Environmental
3300007551	Estuarine microbial communities from the Columbia River estuary - metaG 1549B-3	Environmental
3300007559	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541	Environmental
3300007561	Estuarine microbial communities from the Columbia River estuary - metaG 1561A-3	Environmental
3300007617	Estuarine microbial communities from the Columbia River estuary - metaG 1554B-02	Environmental
3300007621	Estuarine microbial communities from the Columbia River estuary - metaG 1547A-3	Environmental
3300007622	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02	Environmental
3300007630	Estuarine microbial communities from the Columbia River estuary - metaG 1555C-02	Environmental
3300007651	Estuarine microbial communities from the Columbia River estuary - metaG 1555C-3	Environmental
3300007954	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373B_0.2um	Environmental
3300007955	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373B_3.0um	Environmental
3300007972	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0um	Environmental
3300007974	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2um	Environmental
3300007992	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um	Environmental
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental
3300008262	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-C-NA	Environmental
3300008953	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT4	Environmental
3300008990	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT3	Environmental
3300008999	Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545	Environmental
3300009003	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725	Environmental
3300009059	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703	Environmental
3300009152	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG	Environmental
3300009163	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG	Environmental
3300010312	Estuarine microbial communities from the Columbia River estuary - metaG 1549B-02	Environmental
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental
3300011010	Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice	Environmental
3300012663	Freshwater microbial communities from Indian River, Ontario, Canada - S50	Environmental
3300012715	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES122 metaT (Metagenome Metatranscriptome)	Environmental
3300012731	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES145 metaT (Metagenome Metatranscriptome)	Environmental
3300013005	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG	Environmental
3300013295	northern Canada Lakes metatranscriptome co-assembly	Environmental
3300017701	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N	Environmental
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental
3300020141	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1	Environmental
3300020161	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1	Environmental
3300020172	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1	Environmental
3300020493	Freshwater microbial communities from Lake Mendota, WI - 14NOV2009 deep hole epilimnion (SPAdes)	Environmental
3300021963	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D	Environmental
3300022752	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB	Environmental
3300024346	Whole water sample coassembly	Environmental
3300024348	0.2um to 3um size fraction coassembly	Environmental
3300027145	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepA_8h	Environmental
3300027198	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753 (SPAdes)	Environmental
3300027206	Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02 (SPAdes)	Environmental
3300027216	Estuarine microbial communities from the Columbia River estuary - metaG 1546A-3 (SPAdes)	Environmental
3300027236	Estuarine microbial communities from the Columbia River estuary - metaG 1554A-3 (SPAdes)	Environmental
3300027244	Estuarine microbial communities from the Columbia River estuary - metaG 1555C-02 (SPAdes)	Environmental
3300027258	Estuarine microbial communities from the Columbia River estuary - metaG 1562A-3 (SPAdes)	Environmental
3300027294	Estuarine microbial communities from the Columbia River estuary - metaG 1548B-02 (SPAdes)	Environmental
3300027365	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)	Environmental
3300027380	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series LW 2014_7_11 (SPAdes)	Environmental
3300027387	Estuarine microbial communities from the Columbia River estuary - metaG 1562A-02 (SPAdes)	Environmental
3300027468	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DN (SPAdes)	Environmental
3300027563	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)	Environmental
3300027621	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF (SPAdes)	Environmental
3300027644	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN (SPAdes)	Environmental
3300027679	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes)	Environmental
3300027689	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (SPAdes)	Environmental
3300027707	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (SPAdes)	Environmental
3300027720	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)	Environmental
3300027736	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)	Environmental
3300027754	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)	Environmental
3300027756	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)	Environmental
3300027763	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)	Environmental
3300027797	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)	Environmental
3300027892	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)	Environmental
3300027969	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)	Environmental
3300027971	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)	Environmental
3300028025	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC	Environmental
3300028112	Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8h (Metagenome Metatranscriptome)	Environmental
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental
3300033993	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037	Environmental
3300034105	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127	Environmental
3300034120	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172	Environmental
3300034122	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2014-rr0181	Environmental
3300034200	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190	Environmental
3300034356	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12421J11937_101336161	3300000756	Freshwater And Sediment	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILE
FwDRAFT_100336711	3300000882	Freshwater And Marine	MKSQFEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFAIGL
B570J13876_1032693	3300001250	Freshwater	MKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILEC
metazooDRAFT_12229381	3300002195	Lake	MKTDFEIELEMKEAYNQMLDECYPEVKIGYATFSASEILFCCDPVM
B570J29032_1088815614	3300002408	Freshwater	MKSQLEKDLDIKDSFDQMLDDSYPDVKIGYSTFTASEILFNC
JGI25909J50240_10727831	3300003393	Freshwater Lake	MKSQLEKEIEIKESFDQMLDDSYPDVKIGYATYTASEIVFNCDPIA
JGI25921J50272_100662511	3300003430	Freshwater Lake	MKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFAIG
JGI25930J51415_10305021	3300003499	Freshwater Lake	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDP
Ga0066182_100992451	3300004125	Freshwater Lake	MKSQFEKDLDIKDSFIEMLDELYPKYKIGNSTFTASEILECCDPVAFAIGLL
Ga0007761_113637182	3300004792	Freshwater Lake	MTKSQFEKDLDIKDSFIDLLNDVYPSVKIGYSTFTPAEILECCDPVAF
Ga0007761_113834275	3300004792	Freshwater Lake	MTKSQFEKDLDIKDSFIDLLNDVYPSVKIGYSTFTPAEILECC
Ga0007759_113066031	3300004836	Freshwater Lake	MKSQLEKEIEIKESFDQMLDDSYPDVKIGYATYTASEILFNCDPIAYQM
Ga0070374_101195228	3300005517	Freshwater Lake	MKTQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPA
Ga0049080_100183581	3300005582	Freshwater Lentic	MKSQLEKEIEIKESFDQMLDDSYPDVKIGYSTFTASEILFNCDPIA
Ga0049082_100761371	3300005584	Freshwater Lentic	MKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFAI
Ga0102873_10641655	3300007545	Estuarine	MKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAF
Ga0102881_10191621	3300007551	Estuarine	MKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPIA
Ga0102828_10582661	3300007559	Estuarine	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPIAF
Ga0102914_10601066	3300007561	Estuarine	MKSQFEKDLEIKESFIDLLNDVYPYVKIGYSTFTAAEILECCDP
Ga0102897_10350256	3300007617	Estuarine	MKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEI
Ga0102897_10727276	3300007617	Estuarine	MKSQFEIDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAF
Ga0102872_12046781	3300007621	Estuarine	MKSQFEIDLEIKESFIDLLNDVYPTVKIGYSTFTPAEI
Ga0102863_11418284	3300007622	Estuarine	MSMTQFERDLTKKDSCIDLLNEIYREVKIGYSTFTPAEILECCDPIAFHIGVI
Ga0102903_10672431	3300007630	Estuarine	MKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPI
Ga0102900_10248025	3300007651	Estuarine	MTKSQFEKDLDIKDSFIDLLNDVYPSVKIGYSTFT
Ga0105739_10189081	3300007954	Estuary Water	MKSDFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEI
Ga0105740_10307283	3300007955	Estuary Water	MKSQLEKDIETKESFIDLLNDVYPSVKIGYSTFTPAEILECCD
Ga0105745_11052731	3300007972	Estuary Water	MKSQFEKDLDIKDSFIDFLNDVYPSVKIGYSTFTPAEILECCDPIAF
Ga0105747_12870233	3300007974	Estuary Water	MKSQFEKDLEIKDSFIEMLDELYPKYKIGNSTFTASE
Ga0105748_101999113	3300007992	Estuary Water	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPI
Ga0114340_11455403	3300008107	Freshwater, Plankton	MKTEFEKELEMKEAYNALLDEVYPEIKIGYSTFTASEILFNCDPIMYN
Ga0114337_11860675	3300008262	Freshwater, Plankton	MEKTQFEKDLEIKESFIDLLNDIYPSVKIGYSTFTPAEILEC
Ga0104241_10015181	3300008953	Freshwater	MEKTQFEKDLEIKESFIDLLNDVYPDVKIGYSTFTAA
Ga0104241_10102521	3300008953	Freshwater	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPA
Ga0104240_1044501	3300008990	Freshwater	MKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDP
Ga0102816_10275301	3300008999	Estuarine	MKSQFEKDLEIKESFIDLLNDIYPSVKIGYSTFTPA
Ga0102813_10962895	3300009003	Estuarine	MTKSQFEKDLDIKDSFIDLLNDVYPSVKIGYSTFTPAEILECCDP
Ga0102830_11144912	3300009059	Estuarine	KKSQLEKDLEIKESFIDLLNEIYPTVKIGYSTATC*
Ga0114980_104791961	3300009152	Freshwater Lake	MKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECC
Ga0114970_103677225	3300009163	Freshwater Lake	MKSEFEKDLEIKESYNQLLDEIYPDVKIGYSTFTASEILFNCDPIAY
Ga0102883_10570695	3300010312	Estuarine	MTKSQFEKDLDIKDSFIDLLNDVYPSVKIGYSTFTP
Ga0129333_103281767	3300010354	Freshwater To Marine Saline Gradient	MKTDFEKQLEIKESFDAMLDECYPEVKIGYSTFTASEILFNCDPVA
Ga0139557_10844803	3300011010	Freshwater	MTQFERDLTIKESFIDLLNDIYPEVKIGYSTFTPAEILECCDPVAFNIGVI
Ga0157203_10104336	3300012663	Freshwater	MNKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFAI
Ga0157203_10499413	3300012663	Freshwater	MKSQFEIDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPIAFSIG
Ga0157599_11136614	3300012715	Freshwater	MKSQFEKDLEIKESFIDFLNDLYPTVKIGYSTFTP
Ga0157616_12358834	3300012731	Freshwater	MKSQFEKDLEIKESFIDLLNDLYPTVKIGYSTFTPAEILECCDPVAFAIG*
Ga0164292_104932165	3300013005	Freshwater	MKTDFEKELEIKESYDAMLDECYSPVKIGYATFTAS
Ga0170791_101612631	3300013295	Freshwater	MNKSQFEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAE
Ga0170791_148920303	3300013295	Freshwater	MSKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAE
Ga0170791_153214254	3300013295	Freshwater	MKSQFEIDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPIAFSI
Ga0170791_157402635	3300013295	Freshwater	MKSQFEKDLEIKDSFIEMLDELYPKYKIGSSTFTASEI
Ga0181364_100432910	3300017701	Freshwater Lake	MKSQFEKDLDIKDSFIDLLNDVYPSVKIGYSTFTPA
Ga0181359_11942861	3300019784	Freshwater Lake	MKSQFEKDLDIKDSFIEMLDELYPKYKIGNSTFTASEILECCDPVA
Ga0211732_10017651	3300020141	Freshwater	LSMTQFERDLTIKESFIDLLNEIYPEVKIGYSTFTPAEILECCDPIAFS
Ga0211732_10018161	3300020141	Freshwater	MTQFERDLTIKESFIDLLNEIYPEVKIGYSTFTPAEILECCDPIAFS
Ga0211726_109495413	3300020161	Freshwater	MKSQLEKDIITKESFDQALDDIYPDVKIGYSTFTASEILFNCDPIAYQIGL
Ga0211729_113981624	3300020172	Freshwater	MKTQLEKDLEIKEGYDALLDECYPSVKIGYSTFTAS
Ga0208591_10166191	3300020493	Freshwater	MKSQLEKDLDIKDSFDQMLDDSYPDVKIGYSTFTASE
Ga0222712_103682201	3300021963	Estuarine Water	MKSQLEKDLDIKDSFDQMLDDMYPDVKIGYSTFTASEILFNCDP
Ga0214917_102282061	3300022752	Freshwater	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFL
Ga0244775_1000333031	3300024346	Estuarine	MKSQFEIDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCD
Ga0244776_108664303	3300024348	Estuarine	MTKSQFEKDLDIKDSFIDLLNDVYPSVKIGYSTFTPAEILECCDPVA
Ga0255114_10426433	3300027145	Freshwater	MSKSQLEKDLEIKESFIDLLNDVYPSVKIGYSTFTPAEILE
Ga0208163_10071431	3300027198	Estuarine	MTKSQFEKDLDIKDSFIDLLNDVYPSVKIGYSTFTPAEILECCD
Ga0208023_10142385	3300027206	Estuarine	MNKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFAIV
Ga0208677_10147771	3300027216	Estuarine	MKSQFEKDLEIKESFIDLLNDVYPDVKIGYSTFTAAEILE
Ga0208026_10059396	3300027236	Estuarine	MKSQFEKDLEIKESFIDLLNDVYPDVKIGYSTFTAAEILECC
Ga0208173_10174891	3300027244	Estuarine	MKSQFEKDLEIKESFIDLLNDVYPDVKIGYSTFTAAEILEC
Ga0208558_10086951	3300027258	Estuarine	MKSQFEKDLEIKESFIDLLNDVYPDVKIGYSTFTA
Ga0208441_10163561	3300027294	Estuarine	MKSQFEKDLEIKESFIDLLNDVYPDVKIGYSTFTAAEILECCDPIAFAI
Ga0209300_10224631	3300027365	Deep Subsurface	MKTDFEIALEIKEAYDAMLDECYPDVKIGYSTFTASEIL
Ga0208432_10098911	3300027380	Deep Subsurface	MSKSQLEKDLEIKESFIDLLNDLYPTVKIGYSTFTPAEILE
Ga0208311_11270161	3300027387	Estuarine	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFSI
Ga0209247_10282625	3300027468	Freshwater Lake	MKSQLEKEIEIKESFDQMLDDSYPDVKIGYATYTASEI
Ga0209552_10350641	3300027563	Freshwater Lake	MKSQFEKDLDIKDSFIEMLDELYPKYKIGSSTFTASEILE
Ga0208951_10978711	3300027621	Freshwater Lentic	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFAIGL
Ga0209356_10017111	3300027644	Freshwater Lake	MSKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTP
Ga0209356_11807964	3300027644	Freshwater Lake	MKSQFEIDLEIKESFIDLLNDVYPTIKIGYSTFTPAEILE
Ga0209769_10540961	3300027679	Freshwater Lake	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAE
Ga0209551_11935491	3300027689	Freshwater Lake	MKTDFEMALEIKEAYDQMLDECYPEVKIGYSTFTASDILA
Ga0209443_10895051	3300027707	Freshwater Lake	MKSQFEIDLEIKESFIDLLNDVYPTIKIGYSTFTPAE
Ga0209443_11503105	3300027707	Freshwater Lake	MKSQLEKEIEIKESFDQMLDDSYPDVKIGYATYTASEILFNC
Ga0209443_12077963	3300027707	Freshwater Lake	MSMTQFERDLTIKESFIDLLNDVYPEVKIGYSTFTPAEILE
Ga0209617_101646591	3300027720	Freshwater And Sediment	MSKSQLEKDLEIKESFIDLLNDVYPSVKIGYSTFTPAEILECCDPVAFAI
Ga0209190_10449931	3300027736	Freshwater Lake	MKSEFEKDLEIKESYNQLLDEIYPDVKIGYSTFTASEILFN
Ga0209596_12621383	3300027754	Freshwater Lake	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEI
Ga0209444_102474241	3300027756	Freshwater Lake	MSKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFT
Ga0209088_100995121	3300027763	Freshwater Lake	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTP
Ga0209088_103886941	3300027763	Freshwater Lake	MSKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFA
Ga0209107_101332635	3300027797	Freshwater And Sediment	MNKSQFEKDLDIKDSFIDLLNDVYPSVKIGYSTFTPAEIL
Ga0209550_104487581	3300027892	Freshwater Lake	MEKTQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCD
Ga0209191_11948423	3300027969	Freshwater Lake	MKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEIL
Ga0209401_100214328	3300027971	Freshwater Lake	MKSEFEKDLEIKESYDQLLDEIYPDVKIGYSTFTASEILFNCDP
Ga0247723_10250581	3300028025	Deep Subsurface Sediment	MEKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPIAF
Ga0256335_11553991	3300028112	Freshwater	MKTDFEKQLEIKESFDAMLDECYPEVKIGYSTFTASEILFNCDP
Ga0315909_109339431	3300031857	Freshwater	MHEDLDMKDQYDRLLDDMYPEVKIGYSTFTASEILFCCDPIAYKEGFADF
Ga0334994_0525405_392_544	3300033993	Freshwater	MKSQLEKEIEIKESFDQMLDDSYPDVKIGYSTFTASEILFNCDPIAYQIGL
Ga0335035_0734667_373_501	3300034105	Freshwater	MSMTQFERDLTIKESFMDLLNEIYPEVKIGYSTFTPAEILECC
Ga0335056_0276543_835_939	3300034120	Freshwater	MSMTQFERDLTIKESFIDLLNDIYPNVKIGYSTFT
Ga0335060_0167688_2_142	3300034122	Freshwater	MSMTQFERDLTIKESFIDLLNDIYPNVKIGYSTFTPAEILECCDPIA
Ga0335065_0563926_2_157	3300034200	Freshwater	MEKTQFEKDLEIKESFIDLLNDIYPSVKIGYSTFTPAEILECCDPVAFAIGL
Ga0335048_0524790_443_562	3300034356	Freshwater	MKSDFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILE
Ga0335048_0538281_2_118	3300034356	Freshwater	MKSQFEKDLELKESFCQMLDEIYPTYKIGVSTFTASEIL