Scaffold Ga0207602_104876

Overview

Basic Information

• Taxon OID: 3300027458
• Scaffold ID: Ga0207602_104876
• Source Dataset Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE17-B (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 529
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.42
  • Long. (^o): -89.32
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057238	Metagenome / Metatranscriptome	136	N
F101117	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207602_1048761	F101117	GGAGG	MSMFNTNEPRTPGGRMGDDMEKMFLDEAKQDHLAKEAERADADAEHERAELGESVTTKRPWWKFWG
Ga0207602_1048762	F057238	N/A	GTKGRRMSTYERWRDVAGYRPGRHDNSGLRARLSWTKIEDRPIVSELRLAMQEREALTLPRHASSRR