Scaffold Ga0209691_1004740

Overview

Basic Information

• Taxon OID: 3300027279
• Scaffold ID: Ga0209691_1004740
• Source Dataset Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5719
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.963
  • Long. (^o): -110.715

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002372	Metagenome / Metatranscriptome	566	Y
F007172	Metagenome / Metatranscriptome	356	Y
F012676	Metagenome / Metatranscriptome	278	Y
F054900	Metagenome / Metatranscriptome	139	Y
F066811	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209691_100474010	F002372	AGGAG	MPTRREDALWQIVHRKSSHLRALLDALDDVDMSIAYELHYYPYAIVELLRVRDDAPPIVLRSAYVSANRQWERHSEFTLRVVEAALQLVQEYRSDPSLGGAEAWA
Ga0209691_10047402	F066811	AGGAGG	MEFNNQPQFNAPNMTDILNAATSIFNPFVGVLALAIGVTLGARMLGRIVNLF
Ga0209691_10047404	F054900	AGGA	MISRGCANIGAMEYERAVVQLLVYGVTLIMLYVVDRWSRG
Ga0209691_10047406	F007172	AGGAGG	MNTPERRTFAAALRAAKRDTYCRQVGGFVIARMTDGTIDWFPLGQPPHRGGEPDKGAVILGRWRWNYRRWSRIG
Ga0209691_10047407	F012676	AGGAGG	MSTTIKIAAGWDGNPKSLTSPEHNWIRFLEAQGIAYPAYLDEPAGWRLVVCDERRLTRALHALRKYGVYGICEWTYDIH