Scaffold Ga0208009_1000030

Overview

Basic Information

• Taxon OID: 3300027114
• Scaffold ID: Ga0208009_1000030
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39098
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (88.14%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F002301	Metagenome / Metatranscriptome	573	Y
F006544	Metagenome / Metatranscriptome	370	Y
F023330	Metagenome	210	Y
F028458	Metagenome	191	N
F029728	Metagenome / Metatranscriptome	187	Y
F082599	Metagenome	113	N
F097225	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208009_100003010	F002301	GAGG	VDYLEEYEQMVVAIAAEYQRKYPMTDQQDIQQVLWIWFVSHPQKYKEWSELPRKDKDKLIAKSLRNAALKYCEKEKARTVGYELLDLYYYDASVIEAFLPSIIAESYEIPTKIKDLNFKFNKSEPANDGNNWLVLRSDIAAAYYKLSEAKQFILKVRFTVDNVDWSETAKELDTTPDGARMKVQRTIASLIRNLGGWKPQPDDDLVEADDDQRGE
Ga0208009_100003019	F029728	AGGAG	MYLNPITVDAVTYNFTEESLKELIKSESATKLRLESVSLEAQEGYRKIATLRGKVYDFFSEAFDDGSDEVTVTRDDVNELLESIGSDVLTATWSATVEITVTVTGIKATSPEEVEDIITDNIEVSGYDLELHDPDVRVQDIERE
Ga0208009_100003026	F082599	AGGAG	MSYTVHEIADLNESIDAAIASIKKANAILEEMMATGRIYIEGEDNEW
Ga0208009_100003034	F006544	AGGAGG	MTTLVAIQGNGWAAVGCDSRSSGDDGRFMELATHKIIENNGILIAGSGASRGSNILQFGWKAPKPRATDDLDVFMTQTFIPAMRKLFIDSGYDMKEDGDAAAHDSQFLVVVRGVIYPIFEDYSWDRDVRGIYCSGSGADIALGAIEAFANSRKQTTPKVAEIDIRMAIKIASRWDIHTGEPVVVKIQNTK
Ga0208009_10000304	F000368	AGGAGG	MEQFKQLGLTWFRAAAASAVALFLAGESDPKTLAMAALAGFAGPLLKWLDNSAPEFGRGS
Ga0208009_100003053	F097225	GGAG	MDNVTFIEIDGLEHAIIDHGNEQFTSMLKSTYDALLEEQANDQSL
Ga0208009_100003058	F028458	AGG	MAKVNKGTLAIGWCDNGNTDGKFTEGVVSVALQCANNGIELTHSMRVQGNQIGRQRQVLFDYWADHIKTDWLLWIDSDIVVNMEVVTKLWDTVDKINRPVVSGTYFISKEHEGTLAKPYPALFYDVDEFSIQHVHPLPDNELIKVDSAGFGFVLMHKSIIAPMREKFPDQSMFAEQENVGDKYVGEDIVFFRKMQAAGIPLHAHTGALVKHIKRFSLDYGYYALYWAHEHLKNKLNEQQD
Ga0208009_10000309	F023330	GAGG	MTNGENDVAKEIRELLHPTDYSRAMDLRGESIGDVCVCGGDVFHALVAFDQGEICFYFLDGECVNCGSMVTLPHPTNQEFD