Metagenome Family F097225

Basic Information
Family ID	F097225
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	46 residues
Representative Sequence	MDNVTFIEVDGVEHAIIDRGNGEFTSMLKSTYDEQQAANVINEL
Number of Associated Samples	79
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	96.77 %
% of genes near scaffold ends (potentially truncated)	5.77 %
% of genes from short scaffolds (< 2000 bps)	11.54 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (72.115 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater (22.115 % of family members)
Environment Ontology (ENVO)	Unclassified (59.615 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (54.808 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1JGI12421J11937_100181152 2JGI12421J11937_100375863 3JGI12421J11937_100710211 4JGI24028J26656_10028106 5B570J29032_1087960621 6B570J40625_1008982031 7JGI25913J50563_10219722 8Ga0049082_102845431 9Ga0079301_100011924 10Ga0075467_103522412 11Ga0102861_10203163 12Ga0105746_10146442 13Ga0114341_100928534 14Ga0114343_10570323 15Ga0114350_100040523 16Ga0102860_12144572 17Ga0105099_103157542 18Ga0114980_106403962 19Ga0114977_100545563 20Ga0114966_1002386710 21Ga0073936_102816371 22Ga0114974_100774134 23Ga0114974_101477622 24Ga0114976_103334202 25Ga0114982_100087716 26Ga0133913_104657343 27Ga0133913_108411833 28Ga0151515_1067213 29Ga0119955_10285893 30Ga0164293_100995492 31Ga0164292_101476212 32Ga0177922_108061002 33Ga0181364_10708341 34Ga0181350_10876782 35Ga0181362_11253781 36Ga0181365_10223032 37Ga0181365_10728351 38Ga0181356_12241552 39Ga0181358_10262741 40Ga0181358_10672591 41Ga0181355_12938512 42Ga0181359_10735252 43Ga0181359_11924541 44Ga0207193_10253924 45Ga0207193_11103535 46Ga0211734_106023752 47Ga0211734_109353582 48Ga0211726_103409822 49Ga0211729_104120982 50Ga0211729_113645342 51Ga0214207_10406211 52Ga0181351_10024056 53Ga0214921_101890952 54Ga0214921_102163022 55Ga0214919_100456252 56Ga0214919_101517642 57Ga0208250_10445901 58Ga0208009_100003053 59Ga0209599_1000093711 60Ga0209596_10416614 61Ga0209134_100125925 62Ga0209770_103495331 63Ga0209972_102556671 64Ga0209107_100144482 65Ga0209107_101828882 66Ga0209354_101677221 67Ga0209191_12516132 68Ga0209298_101013752 69Ga0247723_10121064 70Ga0247723_10327103 71Ga0247723_10557692 72Ga0247723_10637842 73Ga0247723_11501512 74Ga0315291_104784622 75Ga0315291_106190902 76Ga0315291_106360332 77Ga0315293_106884272 78Ga0315288_111402421 79Ga0315288_116641982 80Ga0315285_108319141 81Ga0315294_101255701 82Ga0315294_108762393 83Ga0315274_101551783 84Ga0315274_120371552 85Ga0315289_113210432 86Ga0315277_101387583 87Ga0315286_101956455 88Ga0334996_0257422_401_523 89Ga0334986_0404745_109_264 90Ga0335023_0009370_788_943 91Ga0334987_0561498_494_640 92Ga0334995_0065156_2_115 93Ga0335019_0046825_2156_2302 94Ga0335019_0253362_198_344 95Ga0335028_0085623_974_1123 96Ga0335010_0219061_656_793 97Ga0335010_0455489_1_117 98Ga0335010_0675900_210_347 99Ga0335027_0118945_1312_1461 100Ga0335036_0183628_589_717 101Ga0335037_0008168_4302_4454 102Ga0335053_0444347_149_283 103Ga0335065_0670748_60_215 104Ga0335007_0220434_781_906
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1JGI12421J11937_100181152 2JGI12421J11937_100375863 3JGI12421J11937_100710211 4JGI24028J26656_10028106 5B570J29032_1087960621 6B570J40625_1008982031 7JGI25913J50563_10219722 8Ga0049082_102845431 9Ga0079301_100011924 10Ga0075467_103522412 11Ga0102861_10203163 12Ga0114341_100928534 13Ga0114343_10570323 14Ga0114350_100040523 15Ga0102860_12144572 16Ga0105099_103157542 17Ga0114966_1002386710 18Ga0114974_101477622 19Ga0114976_103334202 20Ga0133913_104657343 21Ga0151515_1067213 22Ga0119955_10285893 23Ga0164292_101476212 24Ga0177922_108061002 25Ga0181350_10876782 26Ga0181356_12241552 27Ga0181359_11924541 28Ga0207193_10253924 29Ga0207193_11103535 30Ga0211734_106023752 31Ga0211726_103409822 32Ga0211729_104120982 33Ga0211729_113645342 34Ga0214207_10406211 35Ga0181351_10024056 36Ga0214921_101890952 37Ga0214919_101517642 38Ga0208250_10445901 39Ga0209770_103495331 40Ga0209107_101828882 41Ga0209354_101677221 42Ga0209191_12516132 43Ga0247723_10121064 44Ga0247723_10327103 45Ga0247723_10557692 46Ga0247723_11501512 47Ga0315291_106190902 48Ga0315291_106360332 49Ga0315293_106884272 50Ga0315274_120371552 51Ga0315286_101956455 52Ga0334996_0257422_401_523 53Ga0335019_0046825_2156_2302 54Ga0335028_0085623_974_1123 55Ga0335010_0675900_210_347 56Ga0335037_0008168_4302_4454 57Ga0335007_0220434_781_906
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44 1Ga0315288_111402421 2JGI12421J11937_100710211 3JGI24028J26656_10028106 4B570J29032_1087960621 5JGI25913J50563_10219722 6Ga0049082_102845431 7Ga0075467_103522412 8Ga0105746_10146442 9Ga0114341_100928534 10Ga0114343_10570323 11Ga0114350_100040523 12Ga0105099_103157542 13Ga0114980_106403962 14Ga0114977_100545563 15Ga0073936_102816371 16Ga0114974_101477622 17Ga0114976_103334202 18Ga0133913_104657343 19Ga0151515_1067213 20Ga0119955_10285893 21Ga0164293_100995492 22Ga0177922_108061002 23Ga0181350_10876782 24Ga0181356_12241552 25Ga0181358_10262741 26Ga0181359_11924541 27Ga0207193_10253924 28Ga0207193_11103535 29Ga0211734_106023752 30Ga0211734_109353582 31Ga0211726_103409822 32Ga0211729_104120982 33Ga0211729_113645342 34Ga0214207_10406211 35Ga0181351_10024056 36Ga0214921_101890952 37Ga0214921_102163022 38Ga0214919_101517642 39Ga0208250_10445901 40Ga0208009_100003053 41Ga0209596_10416614 42Ga0209107_100144482 43Ga0209107_101828882 44Ga0209354_101677221 45Ga0209191_12516132 46Ga0247723_10121064 47Ga0247723_10327103 48Ga0247723_10557692 49Ga0247723_11501512 50Ga0315291_106190902 51Ga0315291_106360332 52Ga0315293_106884272 53Ga0315274_101551783 54Ga0315289_113210432 55Ga0334996_0257422_401_523 56Ga0334986_0404745_109_264 57Ga0334987_0561498_494_640 58Ga0335019_0046825_2156_2302 59Ga0335019_0253362_198_344 60Ga0335028_0085623_974_1123 61Ga0335010_0675900_210_347 62Ga0335027_0118945_1312_1461 63Ga0335037_0008168_4302_4454 64Ga0335053_0444347_149_283 65Ga0335065_0670748_60_215 66Ga0335007_0220434_781_906
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.44% β-sheet: 26.39% Coil/Unstructured: 54.17%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF13539	Peptidase_M15_4	19.23
PF03406	Phage_fiber_2	5.77
PF05257	CHAP	4.81
PF02018	CBM_4_9	2.88
PF03354	TerL_ATPase	0.96
PF13692	Glyco_trans_1_4	0.96
PF01391	Collagen	0.96
PF13155	Toprim_2	0.96
PF13252	DUF4043	0.96
PF04586	Peptidase_S78	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3740	Phage head maturation protease	Mobilome: prophages, transposons [X]	0.96
COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	Mobilome: prophages, transposons [X]	0.96

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	27.88 %
Unclassified	root	N/A	72.12 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	0.96 %
Unclassified	root	N/A	72.12 %
Viruses	superkingdom	All Organisms → Viruses	26.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.96 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	24.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.88 %
Unclassified	root	N/A	72.12 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.96 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	24.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.88 %
Unclassified	root	N/A	72.12 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.88 %
Unclassified	root	N/A	72.12 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	24.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.96 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	24.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.88 %
Unclassified	root	N/A	72.12 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.96 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	24.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.88 %
Unclassified	root	N/A	72.12 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.88 %
Unclassified	root	N/A	72.12 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	24.04 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000756\|JGI12421J11937_10018115	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2624	Open in IMG/M
3300006639\|Ga0079301_1000119	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	39119	Open in IMG/M
3300008108\|Ga0114341_10092853	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1849	Open in IMG/M
3300008116\|Ga0114350_1000405	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	27495	Open in IMG/M
3300009082\|Ga0105099_10315754	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	918	Open in IMG/M
3300009161\|Ga0114966_10023867	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4590	Open in IMG/M
3300009175\|Ga0073936_10281637	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1094	Open in IMG/M
3300009419\|Ga0114982_1000877	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	15689	Open in IMG/M
3300010885\|Ga0133913_10841183	Not Available	2388	Open in IMG/M
3300011114\|Ga0151515_10672	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	14404	Open in IMG/M

Showing 1 to 10 of 31 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	91.35%
Terrestrial	Environmental → Terrestrial	8.65%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	8.65%
Freshwater	Environmental → Aquatic → Freshwater	87.50%
Marine	Environmental → Aquatic → Marine	3.85%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	1.92%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.92%
Lake	Environmental → Aquatic → Freshwater → Lake	59.62%
Lentic	Environmental → Aquatic → Freshwater → Lentic	26.92%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.96%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	8.65%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	1.92%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.92%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	4.81%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	15.38%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	44.23%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	20.19%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	8.65%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	0.96%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	3.85%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	4.81%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.92%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.96%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	22.12%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	7.69%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	1.92%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	1.92%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	4.81%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	16.35%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	10.58%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	0.96%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	1.92%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.96%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	2.88%
Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic	0.96%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	13.46%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental	Open in IMG/M
3300002091	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome	Environmental	Open in IMG/M
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003431	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN	Environmental	Open in IMG/M
3300005584	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF	Environmental	Open in IMG/M
3300006639	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11	Environmental	Open in IMG/M
3300006803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA	Environmental	Open in IMG/M
3300007544	Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3	Environmental	Open in IMG/M
3300007973	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um	Environmental	Open in IMG/M

Showing 1 to 10 of 79 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12421J11937_100181152	3300000756	Freshwater And Sediment	MDNVKFIDMTDVFTGDVITHAIIDRGNGEFTSMLKSTYDEQQAQQLGGN*
JGI12421J11937_100375863	3300000756	Freshwater And Sediment	MDNVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPSLPE*
JGI12421J11937_100710211	3300000756	Freshwater And Sediment	MDNVKFIKIIGSDGIEVEHAIIDRGNGEFTSMLKSTYDEQQASLRLVT
JGI24028J26656_10028106	3300002091	Lentic	MDKVTFTKDTDGVEYATIDRGNNEFTSMLKSTYDQQQAANAK*
B570J29032_1087960621	3300002408	Freshwater	MENITYITDEQGVEHVVIDRGNGEYTSMLKFTYDEQQAALNGNKL*
B570J40625_1008982031	3300002835	Freshwater	MDKVTFIEDDKSVSHAIIDRGNGEFTSMLKSTYDEQQASVSD*
JGI25913J50563_10219722	3300003431	Freshwater Lake	MDTVTFIEVEELGGVVEHAIIDRGNGEFTSMTKAHYEALQDQAGE*
Ga0049082_102845431	3300005584	Freshwater Lentic	CKMDNVNFNTDERGIEYATIDHGNGAFTSMLKSTYDEQQAEQSTPSLPA*
Ga0079301_100011924	3300006639	Deep Subsurface	MDNVTFIEIDGLEHAIIDHGNEQFTSMLKSTYDALLEEQANDQSL*
Ga0075467_103522412	3300006803	Aqueous	MDNVTFITVDEVEHAIIDRGNGEYTSMPKATYDDMQAALSTPNV*
Ga0102861_10203163	3300007544	Estuarine	MDKVTFIEITDPLTKNVTEYAIIDHGNEKFSSMLKSTYDELKAND*
Ga0105746_10146442	3300007973	Estuary Water	MDKVTFIEITDPLTKNVTEYAIIDHGDEKFSSMLKSTYDELKAND*
Ga0114341_100928534	3300008108	Freshwater, Plankton	MDNVDFVTDEKGIEHAIIDRGNGEYTSMLKSTYDEQQAALDNGNLL*
Ga0114343_10570323	3300008110	Freshwater, Plankton	MDNVSFITVTNQLTNEVVEHAIIDRGNGEFTSMTKATYDAQQAKVGN*
Ga0114350_100040523	3300008116	Freshwater, Plankton	MENVTFIEIETLGGVETHAIIDRGNGEFTSMLKSTYDEMQARQLGGN*
Ga0102860_12144572	3300009056	Estuarine	MKMDNVTYVTIDEVEHAIIDRGNGEFTSMLKSTYDEQQAALSTPSV*
Ga0105099_103157542	3300009082	Freshwater Sediment	MENVTFINVENLDGIIEHAIIDHGNGQYTSMLKSVYDEQQAAALNAHKL*
Ga0114980_106403962	3300009152	Freshwater Lake	MDNVTFVTDKDGVEHAIIDRGNGEFTSMLKSTYDEQQAALSTPIVTSDE*
Ga0114977_100545563	3300009158	Freshwater Lake	MDKVTYITVNDVEHAIIDRGNEEFTSMLKSTYDEQQAALSTPSV*
Ga0114966_1002386710	3300009161	Freshwater Lake	MKNVTYLIDKDGNEHAIIDHGNGEFTSMLKSTYDEQQAALSRPMVTDAPES*
Ga0073936_102816371	3300009175	Freshwater Lake Hypolimnion	MDNVTFIKVTGTDGVEVEHAIIDRGNGEFTSMLKSTYDAQQAT
Ga0114974_100774134	3300009183	Freshwater Lake	MDNVKFIKVIDSIGAEVEHAIIDRGNGEFTSMLKSTYDEQQAQQLGGN*
Ga0114974_101477622	3300009183	Freshwater Lake	MDNVTFIEVEGVEHAIIDRGNGEFTSMTKAHYEELQVAPTP*
Ga0114976_103334202	3300009184	Freshwater Lake	MSDVTFFTDELGNEHAIIDRGNGEYTSMLKSTYDEQQAQQLGGN*
Ga0114982_100087716	3300009419	Deep Subsurface	MDNVTFIEVEGVEHAIIDRGNGEFTSMTKAHYEAQLANEAETI*
Ga0133913_104657343	3300010885	Freshwater Lake	MDNVTFIKVAGIDGTEVEHAIIDRGDGEFTSMTKEHYDKQLEESSN*
Ga0133913_108411833	3300010885	Freshwater Lake	MDNVTYVTDTNGVEHAIIDHGNGEYTSMLKSTYDEQQAALSTP
Ga0151515_1067213	3300011114	Freshwater	MEKVQFVKITNPLNDEVTEHAIIDRGNGEFTSMLKSIYDEQQKAMTIDEPAAKSK*
Ga0119955_10285893	3300012006	Freshwater	MRMDNVIFVIVDEVEHAIIDRGNGEYTSMPKSFYESQQLALSTPIINAD*
Ga0164293_100995492	3300013004	Freshwater	MDKVTFIEVETLGGVQTHAIIDRGNGEFTSMLKSTYDEQQAALNDFNEL*
Ga0164292_101476212	3300013005	Freshwater	MDKVTFIEVETLGGVQTHAIIDRGNGEFTSMTKATYDEQQAALNDFNEL*
Ga0177922_108061002	3300013372	Freshwater	MGNVTFLTRTNIDGTEVEHAIIDRGNGEFTSMLKSTYDA
Ga0181364_10708341	3300017701	Freshwater Lake	MDNVNFNTDERGIEYATIDHGNGAFTSMLKSTYDEQQAALSTPSLPA
Ga0181350_10876782	3300017716	Freshwater Lake	MTMDNVTFVFDSNGTEHAIIDHGNGEYTSMTKSFYDAQQAALSTPIISGDE
Ga0181362_11253781	3300017723	Freshwater Lake	MTMDNVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPSLPA
Ga0181365_10223032	3300017736	Freshwater Lake	MDNVTFVFDSNGTEHAIIDHGNGEYTSMTKSFYDAQQAALSTPIISGDE
Ga0181365_10728351	3300017736	Freshwater Lake	MDNVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPSLPA
Ga0181356_12241552	3300017761	Freshwater Lake	MENVTYFTDSLGVEHAIIDRGNGEFTSMLKSTYEAMQANYLTP
Ga0181358_10262741	3300017774	Freshwater Lake	MENVTFITITNSEDLEIEHAIIDRGNGEYTSMLKSTYDA
Ga0181358_10672591	3300017774	Freshwater Lake	MDNVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPS
Ga0181355_12938512	3300017785	Freshwater Lake	MDNVTVVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPSLPE
Ga0181359_10735252	3300019784	Freshwater Lake	MDNVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPSLPE
Ga0181359_11924541	3300019784	Freshwater Lake	MDNVSFIKVTQPMTGEILEHAIIDRGNGEFTSMLKSTYEAH
Ga0207193_10253924	3300020048	Freshwater Lake Sediment	MDNVTFIDDANGVKHVIIDRGNGEFTSMTKERYDELEAAKENANKL
Ga0207193_11103535	3300020048	Freshwater Lake Sediment	MSNVNFIKSEVDETEYAIIDRGNGEFTSMLKSTYDAM
Ga0211734_106023752	3300020159	Freshwater	MDNVTFITDFQGLEHAIIDRGNGEFTSMLKSTYDEMQANADKL
Ga0211734_109353582	3300020159	Freshwater	MNNVTFIKITGMDGVDVEHAIIDRGNGEFTSMLKSTYDEQQAQQLGGN
Ga0211726_103409822	3300020161	Freshwater	MDNVTFIEMTDAFGNKSTHAIIDRGNGEYTSMLKSTYDEQLAAQSANKL
Ga0211729_104120982	3300020172	Freshwater	MENVEFIFIDEVEHAIIDRGNGEYTSMLKSTYDEQQAALSTPIVSSDE
Ga0211729_113645342	3300020172	Freshwater	MDNVTFIEITDPLTNEVVEHAVIDHGNDKFTSMLKSTYDEQQAAE
Ga0214207_10406211	3300020716	Freshwater	MDKVSFIEVEGVEHAIIDRGNGEFTSMPKANYDAQQAS
Ga0181351_10024056	3300022407	Freshwater Lake	MDKVIFVEVDAAGVIQTHAIIDRGNGEFTSMLKSTYDAQQAALADE
Ga0214921_101890952	3300023174	Freshwater	MNNVTFIEIANPMTEEVVEHAIIDRGNGEFTSMTKAHYEELQAAQAQTATI
Ga0214921_102163022	3300023174	Freshwater	VDNVTFIQTTNPMTEEVVEHAIIDRGNGEFTSMTKEHYEELQAAQAQTATI
Ga0214919_100456252	3300023184	Freshwater	MDNVIFVIVDEVEHAIIDRGNGEYTSMPKSFYESQQLALSTPIINAD
Ga0214919_101517642	3300023184	Freshwater	MDNVTFIEVESMGQMITHAIIDRGNGEYTSMLKSTYDEQQKANDSKS
Ga0208250_10445901	3300025383	Freshwater	MDNVTFIDVTNENGDITQNVIIDRGNGNFTSMLKSTYDAQQSAST
Ga0208009_100003053	3300027114	Deep Subsurface	MDNVTFIEIDGLEHAIIDHGNEQFTSMLKSTYDALLEEQANDQSL
Ga0209599_1000093711	3300027710	Deep Subsurface	MDNVTFIEVEGVEHAIIDRGNGEFTSMTKAHYEAQLANEAETI
Ga0209596_10416614	3300027754	Freshwater Lake	MKNVTYLIDKDGNEHAIIDHGNGEFTSMLKSTYDEQQAALSRPMVTDAPES
Ga0209134_100125925	3300027764	Freshwater Lake	MDTVTFIEVEELGGVVEHAIIDRGNGEFTSMTKAHYEALQDQAGE
Ga0209770_103495331	3300027769	Freshwater Lake	MDNVTFIEVKDFMTGKIVEHAIIDRGNGEYTSMIKSTYDE
Ga0209972_102556671	3300027793	Freshwater Lake	MDNVTFIKNTDPITGEVIEHAIIDRGNGEFTSMLKSTY
Ga0209107_100144482	3300027797	Freshwater And Sediment	MDNVKFIDMTDVFTGDVITHAIIDRGNGEFTSMLKSTYDEQQAQQLGGN
Ga0209107_101828882	3300027797	Freshwater And Sediment	MENVTFIEVETLEGTETHAVIDRGNGEFSSMPKSVYDAQQEAIKP
Ga0209354_101677221	3300027808	Freshwater Lake	MDKVTFVTDEQGVEHAIIDRGNEEFTSMTKAHYDAMQAEQSTPSV
Ga0209191_12516132	3300027969	Freshwater Lake	MNNVTFIEVESHGVVETHAIIDRGNGEYTSMPKSVYDEQQA
Ga0209298_101013752	3300027973	Freshwater Lake	MDNVTFVTDKDGVEHAIIDRGNGEFTSMLKSTYDEQQAALSTPIVTSDE
Ga0247723_10121064	3300028025	Deep Subsurface Sediment	MNNVIFITDNDGFEHAIIDRGNGEFTSMLKSTYDAQLEEQANDQSL
Ga0247723_10327103	3300028025	Deep Subsurface Sediment	MDNVTFIKRIGIDSTEIEHAIIDRGNGEFTSMLKSTYDKQQAQTNVN
Ga0247723_10557692	3300028025	Deep Subsurface Sediment	MDKVTFIDVEAFGEVETHAIIDHGNGEYTSMSKSIYDQLAANEAAPK
Ga0247723_10637842	3300028025	Deep Subsurface Sediment	MSNVTFIEIETMSGKETHAIIDRGNGEFTSMLKSTYDEQQAKQLGGN
Ga0247723_11501512	3300028025	Deep Subsurface Sediment	MNNVTFITDEQGVEHAIIDRGNGEFTSMTKAHYEAQLANEAETK
Ga0315291_104784622	3300031707	Sediment	MDKVTFIEVETLGGVETHAIIDRGNGEFTSMSKATYDEQQAANELNEL
Ga0315291_106190902	3300031707	Sediment	MDKVTFIEVNDVEYAIIDRGNGQFTSMTKTTYDEQQAADELNKL
Ga0315291_106360332	3300031707	Sediment	MEKIKISKFTDLDGIEYEQVVIDRGNGEFTSMLKSTYDEQQAANVINEL
Ga0315293_106884272	3300031746	Sediment	MDKVTFIKVTDPLTNEEIEHAIIDRGNGEFTSMLKSTYDEQQAANVINEL
Ga0315288_111402421	3300031772	Sediment	MDNVTFIEVDGVEHAIIDRGNGEFTSMLKSTYDEQQAANVINEL
Ga0315288_116641982	3300031772	Sediment	MDKVTFIEVETLGGVETHAIIDRGNNEFTSMSKATYDEQQAANELNEL
Ga0315285_108319141	3300031885	Sediment	MDKVMFIKVTDPLTNEEIEHAIIDRGNGEFTSMLKSTYDEQQAANVINEL
Ga0315294_101255701	3300031952	Sediment	MDKVTFIEVNDVEYAIIDRGNGQFTSMTKATYDEQQAADELNKL
Ga0315294_108762393	3300031952	Sediment	MDNVTFIEVNDVEYAIIDRGNGQFTSMTKATYDEQQAADELNKL
Ga0315274_101551783	3300031999	Sediment	MKMDKVTFIEVETLGGVETHAIIDRGNGEFTSMSKATYDEQQAANELNEL
Ga0315274_120371552	3300031999	Sediment	MTMDNVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYDEQQ
Ga0315289_113210432	3300032046	Sediment	MDKVTFITDRLGDEHAIIDRGNGEFTSMLKSTYDEQQAKALNGD
Ga0315277_101387583	3300032118	Sediment	MDNVTFIEVDGVEHAIIDRGNGEFTSMMKSTYDEQQAANVINEL
Ga0315286_101956455	3300032342	Sediment	MDNVTFIEVDGVEHAIIDRGNGEFTSMLKSTYDEQQAANEANEL
Ga0334996_0257422_401_523	3300033994	Freshwater	MDNVTFIEIDGETHAIIDRGNGEFTSMLKSTYDAMQVDGD
Ga0334986_0404745_109_264	3300034012	Freshwater	MTMDKVTFVEVETLGGVETHAIIDRGNGEFTSMSKATYEAQLAANEAINEL
Ga0335023_0009370_788_943	3300034050	Freshwater	MDNVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPMVTDAPKS
Ga0334987_0561498_494_640	3300034061	Freshwater	MDNVSFISMTNLGGVEVEHAIIDRGNGEYTSMLKSTYDEQQAQQLGGN
Ga0334995_0065156_2_115	3300034062	Freshwater	DEQGVEHVVIDRGNGEYTSMLKFTYDEQQAALNGNKL
Ga0335019_0046825_2156_2302	3300034066	Freshwater	MDNVTIVFNEVMGELIETVLIDKGNGEFTSMLKSTYDEQQANTVTLEA
Ga0335019_0253362_198_344	3300034066	Freshwater	MDNVTFIEIETLSGVQIHAIIDRGNGEFTSMLKSTYDEQQANTVTLEA
Ga0335028_0085623_974_1123	3300034071	Freshwater	MDKVTFIELENLNGKWEHAIIDRGNGEFTSMLKSTYDAQQEAIANDQSL
Ga0335010_0219061_656_793	3300034092	Freshwater	MENITYITDEQGVEHVVIDRGNGEYTSMLKFTYDEQQAALNGNKL
Ga0335010_0455489_1_117	3300034092	Freshwater	TFIEDDKSVSHAIIDRGNGEFTSMLKSTYDEQQASVSD
Ga0335010_0675900_210_347	3300034092	Freshwater	MDKVSFITVDEVEHAIIDRGNGEFTSMTKAHYEELEAAKANASEL
Ga0335027_0118945_1312_1461	3300034101	Freshwater	MENVTFIEVETLNGVETHAIIDRGNGEFTSMPKATYDEQQAAILNAPKL
Ga0335036_0183628_589_717	3300034106	Freshwater	MDKVTFIEDDKSVSHAIIDRGNGEFTSMLKSTYDEQQASVSN
Ga0335037_0008168_4302_4454	3300034107	Freshwater	MENVTFVTIDEVEHAIIDRGNGEFTSMLRSTYETQQATLSTPMVTDAPKS
Ga0335053_0444347_149_283	3300034118	Freshwater	MDKVTFIEDDKSVSHAIIDRGNGEFTSMLKSTYDEQQASVSDKL
Ga0335065_0670748_60_215	3300034200	Freshwater	MDKVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPMVTDAPKS
Ga0335007_0220434_781_906	3300034283	Freshwater	MNVTFIKIEGVEHAIIDRGNGEFTSMLKSTYDAMQTEVTND

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F097225

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences