Metagenome Family F097225

Overview

Basic Information

• Family ID: F097225
• Family Type: Metagenome
• Number of Sequences: 104
• Average Sequence Length: 46 residues
• Representative Sequence: MDNVTFIEVDGVEHAIIDRGNGEFTSMLKSTYDEQQAANVINEL
• Number of Associated Samples: 79
• Number of Associated Scaffolds: 104

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 96.77 %
• % of genes near scaffold ends (potentially truncated): 5.77 %
• % of genes from short scaffolds (< 2000 bps): 11.54 %
• Associated GOLD sequencing projects: 75
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (72.115 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater (22.115 % of family members)
• Environment Ontology (ENVO): Unclassified (59.615 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (54.808 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 19.44%
  β-sheet: 26.39%
  Coil/Unstructured: 54.17%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF13539	Peptidase_M15_4	19.23
PF03406	Phage_fiber_2	5.77
PF05257	CHAP	4.81
PF02018	CBM_4_9	2.88
PF03354	TerL_ATPase	0.96
PF13692	Glyco_trans_1_4	0.96
PF01391	Collagen	0.96
PF13155	Toprim_2	0.96
PF13252	DUF4043	0.96
PF04586	Peptidase_S78	0.96
PF01844	HNH	0.96
PF13506	Glyco_transf_21	0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG3740	Phage head maturation protease	Mobilome: prophages, transposons [X]	0.96
COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	Mobilome: prophages, transposons [X]	0.96

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.12 %
All Organisms	root	All Organisms	27.88 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.12 %
Viruses	superkingdom	All Organisms → Viruses	26.92 %
cellular organisms	root	All Organisms → cellular organisms	0.96 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.12 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	24.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.96 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.12 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	24.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.96 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.12 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	24.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.96 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.12 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	24.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.96 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.12 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	24.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.96 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.12 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	24.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.96 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000756|JGI12421J11937_10018115	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2624
3300006639|Ga0079301_1000119	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	39119
3300008108|Ga0114341_10092853	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1849
3300008116|Ga0114350_1000405	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	27495
3300009082|Ga0105099_10315754	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	918
3300009161|Ga0114966_10023867	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4590
3300009175|Ga0073936_10281637	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1094
3300009419|Ga0114982_1000877	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	15689
3300010885|Ga0133913_10841183	Not Available	2388
3300011114|Ga0151515_10672	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	14404
3300019784|Ga0181359_1192454	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	664
3300020048|Ga0207193_1025392	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7138
3300020159|Ga0211734_10935358	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1376
3300020161|Ga0211726_10340982	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	761
3300022407|Ga0181351_1002405	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6495
3300025383|Ga0208250_1044590	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	658
3300027114|Ga0208009_1000030	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	39098
3300027710|Ga0209599_10000937	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	15693
3300027764|Ga0209134_10012592	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2590
3300027797|Ga0209107_10014448	All Organisms → Viruses → Predicted Viral	4488
3300027808|Ga0209354_10167722	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	894
3300028025|Ga0247723_1012106	All Organisms → Viruses → Predicted Viral	3262
3300028025|Ga0247723_1063784	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1011
3300028025|Ga0247723_1150151	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	546
3300031952|Ga0315294_10125570	Not Available	2631
3300031999|Ga0315274_10155178	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2899
3300034050|Ga0335023_0009370	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5735
3300034061|Ga0334987_0561498	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	682
3300034062|Ga0334995_0065156	All Organisms → Viruses → Predicted Viral	2894
3300034106|Ga0335036_0183628	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1463
3300034107|Ga0335037_0008168	All Organisms → cellular organisms → Bacteria	5570

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	91.35%
Terrestrial	Environmental → Terrestrial	8.65%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	87.50%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	8.65%
Marine	Environmental → Aquatic → Marine	3.85%

Type

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	59.62%
Lentic	Environmental → Aquatic → Freshwater → Lentic	26.92%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	8.65%
Coastal	Environmental → Aquatic → Marine → Coastal	1.92%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.92%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.96%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	44.23%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	20.19%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	15.38%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	8.65%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	4.81%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	1.92%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	1.92%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.96%

Habitat

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	22.12%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	16.35%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	13.46%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	10.58%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	7.69%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	4.81%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	4.81%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	3.85%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	2.88%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	1.92%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	1.92%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	1.92%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.96%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.96%
Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic	0.96%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	0.96%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	0.96%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.96%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental
3300002091	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome	Environmental
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental
3300003431	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN	Environmental
3300005584	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF	Environmental
3300006639	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11	Environmental
3300006803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA	Environmental
3300007544	Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3	Environmental
3300007973	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um	Environmental
3300008108	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA	Environmental
3300008110	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA	Environmental
3300008116	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA	Environmental
3300009056	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3	Environmental
3300009082	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015	Environmental
3300009152	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG	Environmental
3300009158	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG	Environmental
3300009161	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG	Environmental
3300009175	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG	Environmental
3300009183	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG	Environmental
3300009184	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG	Environmental
3300009419	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT	Environmental
3300010885	northern Canada Lakes Co-assembly	Environmental
3300011114	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2016Feb	Environmental
3300012006	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B	Environmental
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental
3300013005	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG	Environmental
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental
3300017701	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N	Environmental
3300017716	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D	Environmental
3300017723	Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N	Environmental
3300017736	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N	Environmental
3300017761	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N	Environmental
3300017774	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D	Environmental
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental
3300020159	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1	Environmental
3300020161	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1	Environmental
3300020172	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1	Environmental
3300020716	Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion	Environmental
3300022407	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D	Environmental
3300023174	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505	Environmental
3300023184	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503	Environmental
3300025383	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes)	Environmental
3300027114	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16 (SPAdes)	Environmental
3300027710	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)	Environmental
3300027754	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)	Environmental
3300027764	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)	Environmental
3300027769	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)	Environmental
3300027793	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)	Environmental
3300027797	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)	Environmental
3300027808	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)	Environmental
3300027969	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)	Environmental
3300027973	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)	Environmental
3300028025	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC	Environmental
3300031707	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20	Environmental
3300031746	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20	Environmental
3300031772	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20	Environmental
3300031885	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36	Environmental
3300031952	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40	Environmental
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental
3300032046	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40	Environmental
3300032118	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15	Environmental
3300032342	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0	Environmental
3300033994	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046	Environmental
3300034012	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027	Environmental
3300034050	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095	Environmental
3300034061	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028	Environmental
3300034062	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045	Environmental
3300034066	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087	Environmental
3300034071	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110	Environmental
3300034092	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069	Environmental
3300034101	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107	Environmental
3300034106	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131	Environmental
3300034107	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133	Environmental
3300034118	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165	Environmental
3300034200	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190	Environmental
3300034283	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12421J11937_100181152	3300000756	Freshwater And Sediment	MDNVKFIDMTDVFTGDVITHAIIDRGNGEFTSMLKSTYDEQQAQQLGGN*
JGI12421J11937_100375863	3300000756	Freshwater And Sediment	MDNVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPSLPE*
JGI12421J11937_100710211	3300000756	Freshwater And Sediment	MDNVKFIKIIGSDGIEVEHAIIDRGNGEFTSMLKSTYDEQQASLRLVT
JGI24028J26656_10028106	3300002091	Lentic	MDKVTFTKDTDGVEYATIDRGNNEFTSMLKSTYDQQQAANAK*
B570J29032_1087960621	3300002408	Freshwater	MENITYITDEQGVEHVVIDRGNGEYTSMLKFTYDEQQAALNGNKL*
B570J40625_1008982031	3300002835	Freshwater	MDKVTFIEDDKSVSHAIIDRGNGEFTSMLKSTYDEQQASVSD*
JGI25913J50563_10219722	3300003431	Freshwater Lake	MDTVTFIEVEELGGVVEHAIIDRGNGEFTSMTKAHYEALQDQAGE*
Ga0049082_102845431	3300005584	Freshwater Lentic	CKMDNVNFNTDERGIEYATIDHGNGAFTSMLKSTYDEQQAEQSTPSLPA*
Ga0079301_100011924	3300006639	Deep Subsurface	MDNVTFIEIDGLEHAIIDHGNEQFTSMLKSTYDALLEEQANDQSL*
Ga0075467_103522412	3300006803	Aqueous	MDNVTFITVDEVEHAIIDRGNGEYTSMPKATYDDMQAALSTPNV*
Ga0102861_10203163	3300007544	Estuarine	MDKVTFIEITDPLTKNVTEYAIIDHGNEKFSSMLKSTYDELKAND*
Ga0105746_10146442	3300007973	Estuary Water	MDKVTFIEITDPLTKNVTEYAIIDHGDEKFSSMLKSTYDELKAND*
Ga0114341_100928534	3300008108	Freshwater, Plankton	MDNVDFVTDEKGIEHAIIDRGNGEYTSMLKSTYDEQQAALDNGNLL*
Ga0114343_10570323	3300008110	Freshwater, Plankton	MDNVSFITVTNQLTNEVVEHAIIDRGNGEFTSMTKATYDAQQAKVGN*
Ga0114350_100040523	3300008116	Freshwater, Plankton	MENVTFIEIETLGGVETHAIIDRGNGEFTSMLKSTYDEMQARQLGGN*
Ga0102860_12144572	3300009056	Estuarine	MKMDNVTYVTIDEVEHAIIDRGNGEFTSMLKSTYDEQQAALSTPSV*
Ga0105099_103157542	3300009082	Freshwater Sediment	MENVTFINVENLDGIIEHAIIDHGNGQYTSMLKSVYDEQQAAALNAHKL*
Ga0114980_106403962	3300009152	Freshwater Lake	MDNVTFVTDKDGVEHAIIDRGNGEFTSMLKSTYDEQQAALSTPIVTSDE*
Ga0114977_100545563	3300009158	Freshwater Lake	MDKVTYITVNDVEHAIIDRGNEEFTSMLKSTYDEQQAALSTPSV*
Ga0114966_1002386710	3300009161	Freshwater Lake	MKNVTYLIDKDGNEHAIIDHGNGEFTSMLKSTYDEQQAALSRPMVTDAPES*
Ga0073936_102816371	3300009175	Freshwater Lake Hypolimnion	MDNVTFIKVTGTDGVEVEHAIIDRGNGEFTSMLKSTYDAQQAT
Ga0114974_100774134	3300009183	Freshwater Lake	MDNVKFIKVIDSIGAEVEHAIIDRGNGEFTSMLKSTYDEQQAQQLGGN*
Ga0114974_101477622	3300009183	Freshwater Lake	MDNVTFIEVEGVEHAIIDRGNGEFTSMTKAHYEELQVAPTP*
Ga0114976_103334202	3300009184	Freshwater Lake	MSDVTFFTDELGNEHAIIDRGNGEYTSMLKSTYDEQQAQQLGGN*
Ga0114982_100087716	3300009419	Deep Subsurface	MDNVTFIEVEGVEHAIIDRGNGEFTSMTKAHYEAQLANEAETI*
Ga0133913_104657343	3300010885	Freshwater Lake	MDNVTFIKVAGIDGTEVEHAIIDRGDGEFTSMTKEHYDKQLEESSN*
Ga0133913_108411833	3300010885	Freshwater Lake	MDNVTYVTDTNGVEHAIIDHGNGEYTSMLKSTYDEQQAALSTP
Ga0151515_1067213	3300011114	Freshwater	MEKVQFVKITNPLNDEVTEHAIIDRGNGEFTSMLKSIYDEQQKAMTIDEPAAKSK*
Ga0119955_10285893	3300012006	Freshwater	MRMDNVIFVIVDEVEHAIIDRGNGEYTSMPKSFYESQQLALSTPIINAD*
Ga0164293_100995492	3300013004	Freshwater	MDKVTFIEVETLGGVQTHAIIDRGNGEFTSMLKSTYDEQQAALNDFNEL*
Ga0164292_101476212	3300013005	Freshwater	MDKVTFIEVETLGGVQTHAIIDRGNGEFTSMTKATYDEQQAALNDFNEL*
Ga0177922_108061002	3300013372	Freshwater	MGNVTFLTRTNIDGTEVEHAIIDRGNGEFTSMLKSTYDA
Ga0181364_10708341	3300017701	Freshwater Lake	MDNVNFNTDERGIEYATIDHGNGAFTSMLKSTYDEQQAALSTPSLPA
Ga0181350_10876782	3300017716	Freshwater Lake	MTMDNVTFVFDSNGTEHAIIDHGNGEYTSMTKSFYDAQQAALSTPIISGDE
Ga0181362_11253781	3300017723	Freshwater Lake	MTMDNVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPSLPA
Ga0181365_10223032	3300017736	Freshwater Lake	MDNVTFVFDSNGTEHAIIDHGNGEYTSMTKSFYDAQQAALSTPIISGDE
Ga0181365_10728351	3300017736	Freshwater Lake	MDNVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPSLPA
Ga0181356_12241552	3300017761	Freshwater Lake	MENVTYFTDSLGVEHAIIDRGNGEFTSMLKSTYEAMQANYLTP
Ga0181358_10262741	3300017774	Freshwater Lake	MENVTFITITNSEDLEIEHAIIDRGNGEYTSMLKSTYDA
Ga0181358_10672591	3300017774	Freshwater Lake	MDNVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPS
Ga0181355_12938512	3300017785	Freshwater Lake	MDNVTVVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPSLPE
Ga0181359_10735252	3300019784	Freshwater Lake	MDNVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPSLPE
Ga0181359_11924541	3300019784	Freshwater Lake	MDNVSFIKVTQPMTGEILEHAIIDRGNGEFTSMLKSTYEAH
Ga0207193_10253924	3300020048	Freshwater Lake Sediment	MDNVTFIDDANGVKHVIIDRGNGEFTSMTKERYDELEAAKENANKL
Ga0207193_11103535	3300020048	Freshwater Lake Sediment	MSNVNFIKSEVDETEYAIIDRGNGEFTSMLKSTYDAM
Ga0211734_106023752	3300020159	Freshwater	MDNVTFITDFQGLEHAIIDRGNGEFTSMLKSTYDEMQANADKL
Ga0211734_109353582	3300020159	Freshwater	MNNVTFIKITGMDGVDVEHAIIDRGNGEFTSMLKSTYDEQQAQQLGGN
Ga0211726_103409822	3300020161	Freshwater	MDNVTFIEMTDAFGNKSTHAIIDRGNGEYTSMLKSTYDEQLAAQSANKL
Ga0211729_104120982	3300020172	Freshwater	MENVEFIFIDEVEHAIIDRGNGEYTSMLKSTYDEQQAALSTPIVSSDE
Ga0211729_113645342	3300020172	Freshwater	MDNVTFIEITDPLTNEVVEHAVIDHGNDKFTSMLKSTYDEQQAAE
Ga0214207_10406211	3300020716	Freshwater	MDKVSFIEVEGVEHAIIDRGNGEFTSMPKANYDAQQAS
Ga0181351_10024056	3300022407	Freshwater Lake	MDKVIFVEVDAAGVIQTHAIIDRGNGEFTSMLKSTYDAQQAALADE
Ga0214921_101890952	3300023174	Freshwater	MNNVTFIEIANPMTEEVVEHAIIDRGNGEFTSMTKAHYEELQAAQAQTATI
Ga0214921_102163022	3300023174	Freshwater	VDNVTFIQTTNPMTEEVVEHAIIDRGNGEFTSMTKEHYEELQAAQAQTATI
Ga0214919_100456252	3300023184	Freshwater	MDNVIFVIVDEVEHAIIDRGNGEYTSMPKSFYESQQLALSTPIINAD
Ga0214919_101517642	3300023184	Freshwater	MDNVTFIEVESMGQMITHAIIDRGNGEYTSMLKSTYDEQQKANDSKS
Ga0208250_10445901	3300025383	Freshwater	MDNVTFIDVTNENGDITQNVIIDRGNGNFTSMLKSTYDAQQSAST
Ga0208009_100003053	3300027114	Deep Subsurface	MDNVTFIEIDGLEHAIIDHGNEQFTSMLKSTYDALLEEQANDQSL
Ga0209599_1000093711	3300027710	Deep Subsurface	MDNVTFIEVEGVEHAIIDRGNGEFTSMTKAHYEAQLANEAETI
Ga0209596_10416614	3300027754	Freshwater Lake	MKNVTYLIDKDGNEHAIIDHGNGEFTSMLKSTYDEQQAALSRPMVTDAPES
Ga0209134_100125925	3300027764	Freshwater Lake	MDTVTFIEVEELGGVVEHAIIDRGNGEFTSMTKAHYEALQDQAGE
Ga0209770_103495331	3300027769	Freshwater Lake	MDNVTFIEVKDFMTGKIVEHAIIDRGNGEYTSMIKSTYDE
Ga0209972_102556671	3300027793	Freshwater Lake	MDNVTFIKNTDPITGEVIEHAIIDRGNGEFTSMLKSTY
Ga0209107_100144482	3300027797	Freshwater And Sediment	MDNVKFIDMTDVFTGDVITHAIIDRGNGEFTSMLKSTYDEQQAQQLGGN
Ga0209107_101828882	3300027797	Freshwater And Sediment	MENVTFIEVETLEGTETHAVIDRGNGEFSSMPKSVYDAQQEAIKP
Ga0209354_101677221	3300027808	Freshwater Lake	MDKVTFVTDEQGVEHAIIDRGNEEFTSMTKAHYDAMQAEQSTPSV
Ga0209191_12516132	3300027969	Freshwater Lake	MNNVTFIEVESHGVVETHAIIDRGNGEYTSMPKSVYDEQQA
Ga0209298_101013752	3300027973	Freshwater Lake	MDNVTFVTDKDGVEHAIIDRGNGEFTSMLKSTYDEQQAALSTPIVTSDE
Ga0247723_10121064	3300028025	Deep Subsurface Sediment	MNNVIFITDNDGFEHAIIDRGNGEFTSMLKSTYDAQLEEQANDQSL
Ga0247723_10327103	3300028025	Deep Subsurface Sediment	MDNVTFIKRIGIDSTEIEHAIIDRGNGEFTSMLKSTYDKQQAQTNVN
Ga0247723_10557692	3300028025	Deep Subsurface Sediment	MDKVTFIDVEAFGEVETHAIIDHGNGEYTSMSKSIYDQLAANEAAPK
Ga0247723_10637842	3300028025	Deep Subsurface Sediment	MSNVTFIEIETMSGKETHAIIDRGNGEFTSMLKSTYDEQQAKQLGGN
Ga0247723_11501512	3300028025	Deep Subsurface Sediment	MNNVTFITDEQGVEHAIIDRGNGEFTSMTKAHYEAQLANEAETK
Ga0315291_104784622	3300031707	Sediment	MDKVTFIEVETLGGVETHAIIDRGNGEFTSMSKATYDEQQAANELNEL
Ga0315291_106190902	3300031707	Sediment	MDKVTFIEVNDVEYAIIDRGNGQFTSMTKTTYDEQQAADELNKL
Ga0315291_106360332	3300031707	Sediment	MEKIKISKFTDLDGIEYEQVVIDRGNGEFTSMLKSTYDEQQAANVINEL
Ga0315293_106884272	3300031746	Sediment	MDKVTFIKVTDPLTNEEIEHAIIDRGNGEFTSMLKSTYDEQQAANVINEL
Ga0315288_111402421	3300031772	Sediment	MDNVTFIEVDGVEHAIIDRGNGEFTSMLKSTYDEQQAANVINEL
Ga0315288_116641982	3300031772	Sediment	MDKVTFIEVETLGGVETHAIIDRGNNEFTSMSKATYDEQQAANELNEL
Ga0315285_108319141	3300031885	Sediment	MDKVMFIKVTDPLTNEEIEHAIIDRGNGEFTSMLKSTYDEQQAANVINEL
Ga0315294_101255701	3300031952	Sediment	MDKVTFIEVNDVEYAIIDRGNGQFTSMTKATYDEQQAADELNKL
Ga0315294_108762393	3300031952	Sediment	MDNVTFIEVNDVEYAIIDRGNGQFTSMTKATYDEQQAADELNKL
Ga0315274_101551783	3300031999	Sediment	MKMDKVTFIEVETLGGVETHAIIDRGNGEFTSMSKATYDEQQAANELNEL
Ga0315274_120371552	3300031999	Sediment	MTMDNVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYDEQQ
Ga0315289_113210432	3300032046	Sediment	MDKVTFITDRLGDEHAIIDRGNGEFTSMLKSTYDEQQAKALNGD
Ga0315277_101387583	3300032118	Sediment	MDNVTFIEVDGVEHAIIDRGNGEFTSMMKSTYDEQQAANVINEL
Ga0315286_101956455	3300032342	Sediment	MDNVTFIEVDGVEHAIIDRGNGEFTSMLKSTYDEQQAANEANEL
Ga0334996_0257422_401_523	3300033994	Freshwater	MDNVTFIEIDGETHAIIDRGNGEFTSMLKSTYDAMQVDGD
Ga0334986_0404745_109_264	3300034012	Freshwater	MTMDKVTFVEVETLGGVETHAIIDRGNGEFTSMSKATYEAQLAANEAINEL
Ga0335023_0009370_788_943	3300034050	Freshwater	MDNVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPMVTDAPKS
Ga0334987_0561498_494_640	3300034061	Freshwater	MDNVSFISMTNLGGVEVEHAIIDRGNGEYTSMLKSTYDEQQAQQLGGN
Ga0334995_0065156_2_115	3300034062	Freshwater	DEQGVEHVVIDRGNGEYTSMLKFTYDEQQAALNGNKL
Ga0335019_0046825_2156_2302	3300034066	Freshwater	MDNVTIVFNEVMGELIETVLIDKGNGEFTSMLKSTYDEQQANTVTLEA
Ga0335019_0253362_198_344	3300034066	Freshwater	MDNVTFIEIETLSGVQIHAIIDRGNGEFTSMLKSTYDEQQANTVTLEA
Ga0335028_0085623_974_1123	3300034071	Freshwater	MDKVTFIELENLNGKWEHAIIDRGNGEFTSMLKSTYDAQQEAIANDQSL
Ga0335010_0219061_656_793	3300034092	Freshwater	MENITYITDEQGVEHVVIDRGNGEYTSMLKFTYDEQQAALNGNKL
Ga0335010_0455489_1_117	3300034092	Freshwater	TFIEDDKSVSHAIIDRGNGEFTSMLKSTYDEQQASVSD
Ga0335010_0675900_210_347	3300034092	Freshwater	MDKVSFITVDEVEHAIIDRGNGEFTSMTKAHYEELEAAKANASEL
Ga0335027_0118945_1312_1461	3300034101	Freshwater	MENVTFIEVETLNGVETHAIIDRGNGEFTSMPKATYDEQQAAILNAPKL
Ga0335036_0183628_589_717	3300034106	Freshwater	MDKVTFIEDDKSVSHAIIDRGNGEFTSMLKSTYDEQQASVSN
Ga0335037_0008168_4302_4454	3300034107	Freshwater	MENVTFVTIDEVEHAIIDRGNGEFTSMLRSTYETQQATLSTPMVTDAPKS
Ga0335053_0444347_149_283	3300034118	Freshwater	MDKVTFIEDDKSVSHAIIDRGNGEFTSMLKSTYDEQQASVSDKL
Ga0335065_0670748_60_215	3300034200	Freshwater	MDKVTFVTDEQGVEHAIIDRGNGEYTSMQKTTYEAQQAALSTPMVTDAPKS
Ga0335007_0220434_781_906	3300034283	Freshwater	MNVTFIKIEGVEHAIIDRGNGEFTSMLKSTYDAMQTEVTND