Scaffold Ga0208342_100668

Overview

Basic Information

• Taxon OID: 3300026723
• Scaffold ID: Ga0208342_100668
• Source Dataset Name: Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized - NN357 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 841
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Source Dataset Sampling Location

• Location Name: Chapel Hill, North Carolina, USA
• Coordinates
  • Lat. (^o): 35.913
  • Long. (^o): -79.056

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013831	Metagenome / Metatranscriptome	268	Y
F055055	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208342_1006681	F013831	GGA	VLVRLPNKRAVRAAIHQLSTSGGVIHLEKPLDEKLEVEMIFHISKATIRSKAQMLFPMWATQGWMQPFRFVDLAEKSREILDTKLKAFLGEAANGAAAGA
Ga0208342_1006683	F055055	AGGAG	MKRLSFLVSLTNNDNDYQQEQAAAAEKTARRLGVEVKIIHANNDA