Scaffold Ga0208573_10009

Overview

Basic Information

• Taxon OID: 3300026632
• Scaffold ID: Ga0208573_10009
• Source Dataset Name: Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN346 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1674
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Source Dataset Sampling Location

• Location Name: Chapel Hill, North Carolina, USA
• Coordinates
  • Lat. (^o): 35.913
  • Long. (^o): -79.056

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045919	Metagenome	152	Y
F059390	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208573_100092	F059390	GGAGG	MQIATVGTLAITIGWLIALIVLLLAILGLIGVVPTSPVVVFGLIGALAVARLT
Ga0208573_100094	F045919	N/A	MPGQLYDWTCSACSLEWTKRAVGLIAPPEDIYGSRETTVYEIGYPDNINATYGLMDGSGAQLARVLDGYGQDSLQGYGLSFDDVYDLAQDGTPMMMSGAAWYHWVAVRGVQGNTLWIANSAPGYKGVWDNLSREDFNRLGGFSVVWLT