3300026632: Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN346 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026632
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0054847 | Ga0208573
• Sample Name: Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN346 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2451489
• Sequencing Scaffolds: 3
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): grassland biome → land → grassland soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Chapel Hill, North Carolina, USA
• Coordinates
  • Lat. (^o): 35.913
  • Long. (^o): -79.056
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002217	Metagenome / Metatranscriptome	582	Y
F045266	Metagenome / Metatranscriptome	153	Y
F045919	Metagenome	152	Y
F059390	Metagenome / Metatranscriptome	134	Y
F090901	Metagenome / Metatranscriptome	108	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208573_10009	All Organisms → Viruses → Predicted Viral	1674
Ga0208573_10043	Not Available	1012
Ga0208573_10346	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208573_10009	Ga0208573_100092	F059390	MQIATVGTLAITIGWLIALIVLLLAILGLIGVVPTSPVVVFGLIGALAVARLT
Ga0208573_10009	Ga0208573_100094	F045919	MPGQLYDWTCSACSLEWTKRAVGLIAPPEDIYGSRETTVYEIGYPDNINATYGLMDGSGAQLARVLDGYGQDSLQGYGLSFDDVYDLAQDGTPMMMSGAAWYHWVAVRGVQGNTLWIANSAPGYKGVWDNLSREDFNRLGGFSVVWLT
Ga0208573_10043	Ga0208573_100432	F045266	MPGGKKYTPPVSKAQARLFGAAAGGQIPGFSPDEAKNKLRGVDESKLPKTSKGKGKK
Ga0208573_10117	Ga0208573_101172	F090901	VLLRRARVNEVGFEIVNTDLESRYRLRRILVEAMERAPEGKSKEWDGVRKS
Ga0208573_10346	Ga0208573_103462	F002217	KDSRYKISGMHVPEITVRAGEQILLRVTARKAKSLNRDGSIHGFTLLRAKDRSKVEGWDLLFKPGTQEFLVTAPNEPGEYVAVCTVICSEEHEGMHMKVIVLP