Scaffold Ga0256913_10143882

Overview

Basic Information

• Taxon OID: 3300026546
• Scaffold ID: Ga0256913_10143882
• Source Dataset Name: Deep-sea worm associated microbial mat communities from Axial Seamount, Juan de Fuca Ridge, Pacific Ocean - Axial_Mat
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1400
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Microbial Mats → Deep-Sea Worm Associated Microbial Mat → Marine Microbial Communities From Hydrothermal Vents In The Atlantic And Pacific Ocean

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Juan de Fuca Ridge
• Coordinates
  • Lat. (^o): 45.9333
  • Long. (^o): -130.0138
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F089534	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256913_101438824	F089534	N/A	MKKRKLNSKNPKYRKGEEEKLVVLKKVPLTGKAKGYGVWYKNEK