Scaffold Ga0256821_1004594

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0256821_1004594

Scaffold Ga0256821_1004594

Overview

Basic Information
Taxon OID	3300026452 Open in IMG/M
Scaffold ID	Ga0256821_1004594 Open in IMG/M
Source Dataset Name	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PU4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1271
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Sediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.3377	Long. (^o)	-81.4644	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F071396	Metagenome / Metatranscriptome	122	N
F077375	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256821_10045942	F077375	GGAG	MVGKIARGAYVLVVGTMFVVWAITFNKEAPAKPQTGLQVWYIHS
Ga0256821_10045943	F071396	GAG	MRAAYGRMYMSTALAQVVIPFGDFGDGFEKYLVATITFLLLY

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