NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209152_10000342

Scaffold Ga0209152_10000342


Overview

Basic Information
Taxon OID3300026325 Open in IMG/M
Scaffold IDGa0209152_10000342 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22647
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (45.45%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010022Metagenome309Y
F014723Metagenome260N
F021496Metagenome218N
F023077Metagenome211N
F041118Metagenome160N
F048885Metagenome / Metatranscriptome147N
F099704Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209152_1000034217F041118GAGGMTRLSFELVDPNSGEGASAEAVVDEKLIEDLNSYRSQGSRGKAFLIWIDTLKGEVSWQLRKIPDPFE
Ga0209152_1000034219F023077N/AMTTTIALLVFPVHSATMNPEENVNLYTGNRLMIDSNQPSIKSVVVRGNLTGATLSNNAYPAKNFTLTTNSTQLYTVDLLLSYQAPYTTEIVISDPSSGSKTQYTSYFVSGGDLNLTVFASFQAAPSTGPSTPLGWSSFYGWVSQFGGAFPFWIKILYAVLGAQFAFVGYRWIKFEDERRRIEGHLPPLDRGNKVYLWTEVVFRTLIAGFAISLAVMIGEVLVLLIAQYLLFVNLNLISLVDFFSIFFVAALGTLVYLTREGLERIFDLKPIMED
Ga0209152_1000034220F014723GGAMFAAICVALELLFFYNALNTGVVDKTVSIPIGSWSLPISIALFLSLGNALFMVTLWMNVFESTAYVRAGPDKQVRRILYPLRMIRTAALVLAPFTIILFAPYIVEANWFVNSVVSIQAFKQTTESFYNWAFNVSQIDGATRFIISQMLATLGALFIAGLQLWRVKGTKNLVRAFQRRK
Ga0209152_1000034221F010022N/AMRKNILVAGVTLLALALLFGASYPTGLLFSIPISILNIIFGLVTRTSPGFESRPESANIRLVIDRGVVRASIYQLVFLNSKLILKRLSSMMVTVIPAFVLALLGLEVLWIVGALMGGITGFSLQEFLTQRMRNRMRSEMQLTSVGKSDIDISYDDLLEVRLVKSRLYLITETSSLSASFPRGYSRKIQPMLVNIFESKFTTEESVRAAEAAEKENEKGEHPRGDRGKLSCR
Ga0209152_1000034222F099704GGAMPDQMNVWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0209152_100003426F021496AGGMAHPSRVKSKIAGGIPHMPFQEFTANSLEQLLAELKDAKILDARIEVSASEDGRHYACSKPLVNVLVYTSHSLGEEQEYKDLLALYQYCPDCKNAVRVL
Ga0209152_100003429F048885N/AMRLLAECPSCGASFIMDTVTEKRPRVEASDPNQHIIWDWKAEKWIPAKRS

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