Metagenome Family F099704

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099704
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	46 residues
Representative Sequence	MPDQTNAWKIRVKKGNYEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR
Number of Associated Samples	60
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	32.04 %
% of genes near scaffold ends (potentially truncated)	33.01 %
% of genes from short scaffolds (< 2000 bps)	73.79 %
Associated GOLD sequencing projects	49
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Archaea (95.146 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (44.660 % of family members)
Environment Ontology (ENVO)	Unclassified (49.515 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.427 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54 1JGI25385J37094_1000003014 2JGI25385J37094_100047442 3JGI25385J37094_100189092 4JGI25384J37096_102462171 5JGI25382J37095_100946391 6JGI25382J37095_101801342 7JGI25382J37095_101908221 8JGI25382J37095_102541851 9Ga0066672_101342944 10Ga0066672_104937692 11Ga0066672_105467331 12Ga0066680_100290395 13Ga0066680_101497762 14Ga0066680_102658263 15Ga0066680_104375311 16Ga0066680_106052331 17Ga0066676_106410372 18Ga0066686_101447352 19Ga0066686_107624831 20Ga0066689_100012832 21Ga0070699_1000378936 22Ga0070697_1001366821 23Ga0066697_100835613 24Ga0066701_105235181 25Ga0066661_100727433 26Ga0066692_103884482 27Ga0066700_100173291 28Ga0066700_110140182 29Ga0066700_110929672 30Ga0066706_105046084 31Ga0070716_1018484822 32Ga0079222_108831721 33Ga0066659_101766421 34Ga0099791_101289281 35Ga0099791_101835774 36Ga0099793_106421132 37Ga0099794_100285662 38Ga0099794_101440592 39Ga0099794_103744542 40Ga0099829_101823213 41Ga0099829_102492482 42Ga0099830_105776951 43Ga0099830_106875001 44Ga0099828_103962501 45Ga0099828_110362422 46Ga0099828_117224122 47Ga0066709_1013579602 48Ga0134088_105764681 49Ga0137399_100345413 50Ga0137362_115364372 51Ga0137380_100488472 52Ga0137380_100952541 53Ga0137380_103964083 54Ga0137380_106633362 55Ga0137380_111956321 56Ga0137387_101520291 57Ga0137387_109510602 58Ga0137372_100675981 59Ga0137386_100575952 60Ga0137385_101449111 61Ga0137385_101459662 62Ga0137385_101468251 63Ga0137385_108251421 64Ga0137360_104589862 65Ga0137395_103010223 66Ga0137396_100466092 67Ga0137396_100821042 68Ga0137396_102323603 69Ga0137396_103085972 70Ga0137396_103415082 71Ga0137396_106044042 72Ga0134083_102395762 73Ga0066655_102999702 74Ga0066655_107612952 75Ga0066655_109322162 76Ga0066662_100635422 77Ga0215015_111075822 78Ga0210404_100409511 79Ga0137417_13665371 80Ga0209234_11449701 81Ga0209236_10828964 82Ga0209236_11115064 83Ga0209055_10566443 84Ga0209055_10678501 85Ga0209154_10060296 86Ga0209154_10344771 87Ga0209154_10712884 88Ga0209152_1000034222 89Ga0209802_10049488 90Ga0209690_10690314 91Ga0209806_10020066 92Ga0209056_101628184 93Ga0209156_104872892 94Ga0209588_10567492 95Ga0209689_11365642 96Ga0209180_103322682 97Ga0209180_103893222 98Ga0209701_105001461 99Ga0209283_102063592 100Ga0209283_106739821 101Ga0209590_106895982 102Ga0137415_103095691 103Ga0137415_107757591
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54 1JGI25385J37094_1000003014 2Ga0066701_105235181 3Ga0099830_106875001 4Ga0137396_103085972
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54 1JGI25385J37094_1000003014 2Ga0066701_105235181 3Ga0099830_106875001 4Ga0137396_103085972
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.67% β-sheet: 20.83% Coil/Unstructured: 37.50%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF13508	Acetyltransf_7	3.88
PF13673	Acetyltransf_10	1.94
PF05362	Lon_C	1.94
PF00248	Aldo_ket_red	0.97
PF08241	Methyltransf_11	0.97
PF07282	OrfB_Zn_ribbon	0.97
PF00004	AAA	0.97
PF01037	AsnC_trans_reg	0.97
PF00296	Bac_luciferase	0.97
PF00988	CPSase_sm_chain	0.97

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COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0466	ATP-dependent Lon protease, bacterial type	Posttranslational modification, protein turnover, chaperones [O]	1.94
COG0505	Carbamoylphosphate synthase small subunit	Amino acid transport and metabolism [E]	1.94
COG1067	Predicted ATP-dependent protease	Posttranslational modification, protein turnover, chaperones [O]	1.94
COG1750	Predicted archaeal serine protease, S18 family	General function prediction only [R]	1.94
COG3480	Predicted secreted protein YlbL, contains PDZ domain	Signal transduction mechanisms [T]	1.94
COG1384	Lysyl-tRNA synthetase, class I	Translation, ribosomal structure and biogenesis [J]	0.97
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.97

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.15 %
Unclassified	root	N/A	4.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.15 %
Unclassified	root	N/A	4.85 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	95.15 %
Unclassified	root	N/A	4.85 %

Name	Rank	Taxonomy	Distribution
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	23.30 %
Unclassified	root	N/A	4.85 %
unclassified Archaea	no rank	All Organisms → cellular organisms → Archaea → unclassified Archaea	0.97 %

Name	Rank	Taxonomy	Distribution
archaeon 13_2_20CM_2_52_21	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_2_20CM_2_52_21	0.97 %
Candidatus Bathyarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	21.36 %
Unclassified	root	N/A	4.85 %

Name	Rank	Taxonomy	Distribution
archaeon 13_2_20CM_2_52_21	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_2_20CM_2_52_21	0.97 %
Unclassified	root	N/A	4.85 %
unclassified Candidatus Bathyarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota	21.36 %

Name	Rank	Taxonomy	Distribution
archaeon 13_2_20CM_2_52_21	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_2_20CM_2_52_21	0.97 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	21.36 %
Unclassified	root	N/A	4.85 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002558\|JGI25385J37094_10000030	All Organisms → cellular organisms → Archaea	21710	Open in IMG/M
3300002558\|JGI25385J37094_10004744	All Organisms → cellular organisms → Archaea	4760	Open in IMG/M
3300002558\|JGI25385J37094_10018909	All Organisms → cellular organisms → Archaea	2462	Open in IMG/M
3300002561\|JGI25384J37096_10246217	Not Available	521	Open in IMG/M
3300002562\|JGI25382J37095_10094639	All Organisms → cellular organisms → Archaea	1069	Open in IMG/M
3300002562\|JGI25382J37095_10180134	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	652	Open in IMG/M
3300002562\|JGI25382J37095_10190822	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	624	Open in IMG/M
3300002562\|JGI25382J37095_10254185	All Organisms → cellular organisms → Archaea	530	Open in IMG/M
3300005167\|Ga0066672_10134294	All Organisms → cellular organisms → Archaea	1540	Open in IMG/M
3300005167\|Ga0066672_10493769	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	796	Open in IMG/M

Showing 1 to 10 of 103 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	2.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	97.09%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.97%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	47.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	47.57%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	15.53%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	32.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.97%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	44.66%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M

Showing 1 to 10 of 60 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_1000003014	3300002558	Grasslands Soil	MPDQTNAWKIRVRKGNYEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
JGI25385J37094_100047442	3300002558	Grasslands Soil	MPDQTIAWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
JGI25385J37094_100189092	3300002558	Grasslands Soil	MPDQTNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
JGI25384J37096_102462171	3300002561	Grasslands Soil	MPEQPNTWRIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
JGI25382J37095_100946391	3300002562	Grasslands Soil	MPDQMNTWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
JGI25382J37095_101801342	3300002562	Grasslands Soil	MPEQMNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
JGI25382J37095_101908221	3300002562	Grasslands Soil	MPDQVNAWKIRVKKGNSEVEVAGPSPEIVQKMFEELVKKYMTKLASSR*
JGI25382J37095_102541851	3300002562	Grasslands Soil	CAMPDQMNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0066672_101342944	3300005167	Soil	MPDQMNVWKIRVKKGNYEVEVAGPSPEIVQKMFEELVKKYMTKL
Ga0066672_104937692	3300005167	Soil	MPEQTIAWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0066672_105467331	3300005167	Soil	NVWKIRVKKGNYEVEVAGPSPEIVQKMFEELVKKYMTKLASSR*
Ga0066680_100290395	3300005174	Soil	MNVWKIRVKKGNYEVEVAGPSPEIVQKMFEELVKKYMTKLASSR*
Ga0066680_101497762	3300005174	Soil	MPDQTNSWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0066680_102658263	3300005174	Soil	QMNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0066680_104375311	3300005174	Soil	MPDQMNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0066680_106052331	3300005174	Soil	MPEQTNAWKIRVKKGNYEVEVAGPSPEIVQKMFEELVKKYMTKLASSR*
Ga0066676_106410372	3300005186	Soil	MPDQTIPWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0066686_101447352	3300005446	Soil	MPEQTNVWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0066686_107624831	3300005446	Soil	AMRDQTNSWKIRVKKGNYEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0066689_100012832	3300005447	Soil	MNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0070699_1000378936	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MPDQMSTWKIRVKKGNYEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0070697_1001366821	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MRSMPDQMNTWKIRVKKGNYEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0066697_100835613	3300005540	Soil	RVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0066701_105235181	3300005552	Soil	MPDQTIAWKIRVKKGNYEVEVAGPSHEIVQKMFEE
Ga0066661_100727433	3300005554	Soil	MPDQMNVWKIRVKKGNYEVEVAGPSPEIVQKMFEELVKKYMTKLASSR*
Ga0066692_103884482	3300005555	Soil	AWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0066700_100173291	3300005559	Soil	MPDQTIAWKIRVKKGNYEVEVAGPSHEIVQKMFEEL
Ga0066700_110140182	3300005559	Soil	MPDQMNVWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0066700_110929672	3300005559	Soil	MPDQMNAWKIRVKKGNYEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0066706_105046084	3300005598	Soil	MPEQTIAWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLA
Ga0070716_1018484822	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MPDQTNAWKIRVKKGNYEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0079222_108831721	3300006755	Agricultural Soil	MPDQMNTWKIRVRKGNYEVEVAGPSPETVQKIFEELVKKYMTKLASSR*
Ga0066659_101766421	3300006797	Soil	MPDQTNTWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0099791_101289281	3300007255	Vadose Zone Soil	MPEQTNSWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0099791_101835774	3300007255	Vadose Zone Soil	MPEQTNVWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTELASSR*
Ga0099793_106421132	3300007258	Vadose Zone Soil	MPDQANAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0099794_100285662	3300007265	Vadose Zone Soil	MPEQMNVWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0099794_101440592	3300007265	Vadose Zone Soil	MPEQTIPWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0099794_103744542	3300007265	Vadose Zone Soil	MNVWKIRVKKGNSEVEVAGPSPEVVQKMFEELVKKYMTKLASSR*
Ga0099829_101823213	3300009038	Vadose Zone Soil	MNVWKIRVKKGNSEVEVAGPSPEVVQKMFEDLVKKYMTKLASSR*
Ga0099829_102492482	3300009038	Vadose Zone Soil	MNTWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0099830_105776951	3300009088	Vadose Zone Soil	MPDQNTAWKIRVKKWNSEVEVAGPSPEIVQKMFEELVKKYMTKLASSR*
Ga0099830_106875001	3300009088	Vadose Zone Soil	KGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0099828_103962501	3300009089	Vadose Zone Soil	MPDQVNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTRLASSR*
Ga0099828_110362422	3300009089	Vadose Zone Soil	MPEQTNVWKIRVKKGNSEVEVAGPSPEIVQKMFEELVKKYMTKLASSR*
Ga0099828_117224122	3300009089	Vadose Zone Soil	KKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0066709_1013579602	3300009137	Grasslands Soil	MPEQPNTWRIRVKKGNYEVEVAGPSHEIVQKMFDELVKKYMTKLASSR*
Ga0134088_105764681	3300010304	Grasslands Soil	MRDQTNSWKIRVKKGNYEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137399_100345413	3300012203	Vadose Zone Soil	MPEQTNAWKIRVKKGNSEVEVAGPSPEIVQRMFEDLVKKYMTKLASSR*
Ga0137362_115364372	3300012205	Vadose Zone Soil	IRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137380_100488472	3300012206	Vadose Zone Soil	MPDQTNTWKIKVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137380_100952541	3300012206	Vadose Zone Soil	NSATAAMPDQTNSWKIRVKKGNYEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137380_103964083	3300012206	Vadose Zone Soil	MPDQTNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASS
Ga0137380_106633362	3300012206	Vadose Zone Soil	KIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137380_111956321	3300012206	Vadose Zone Soil	MPDQTNSWKIRVKKGNYEVEVAGPSPEIVQKMFED
Ga0137387_101520291	3300012349	Vadose Zone Soil	WKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137387_109510602	3300012349	Vadose Zone Soil	AMPDQTNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137372_100675981	3300012350	Vadose Zone Soil	WKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0137386_100575952	3300012351	Vadose Zone Soil	MPDESNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137385_101449111	3300012359	Vadose Zone Soil	MPDQTNTWKIRVKKGNSEVEVAGPSPEIVQKMFEALVKNYITKLASSR*
Ga0137385_101459662	3300012359	Vadose Zone Soil	MPDQTNSWKIRVKKGNYEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137385_101468251	3300012359	Vadose Zone Soil	MPEQTNTWKIKVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137385_108251421	3300012359	Vadose Zone Soil	TWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137360_104589862	3300012361	Vadose Zone Soil	MPDQTNPWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137395_103010223	3300012917	Vadose Zone Soil	MPEQTNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137396_100466092	3300012918	Vadose Zone Soil	MPEQTNVWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR*
Ga0137396_100821042	3300012918	Vadose Zone Soil	MPEQMNIWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0137396_102323603	3300012918	Vadose Zone Soil	MPEQTNAWKIRVKKGNSEVEVAGPSPEIVQRMFEELVKKYMTKLASSR*
Ga0137396_103085972	3300012918	Vadose Zone Soil	NVWKIRGKKGNSEVEVAGPSPQIVQKMFENLVKK*
Ga0137396_103415082	3300012918	Vadose Zone Soil	MNVWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0137396_106044042	3300012918	Vadose Zone Soil	CAMPEQTNVWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR*
Ga0134083_102395762	3300017659	Grasslands Soil	ELCNCAMPDQTIAWKITVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0066655_102999702	3300018431	Grasslands Soil	MPEQTNVWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0066655_107612952	3300018431	Grasslands Soil	MPEQTIAWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0066655_109322162	3300018431	Grasslands Soil	MPDQTIAWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0066662_100635422	3300018468	Grasslands Soil	MPDQMNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR
Ga0215015_111075822	3300021046	Soil	MPDQTNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR
Ga0210404_100409511	3300021088	Soil	MPDQTNAWKIRVRKGNYEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR
Ga0137417_13665371	3300024330	Vadose Zone Soil	MPEQTNVWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR
Ga0209234_11449701	3300026295	Grasslands Soil	MPEQPNTWRIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0209236_10828964	3300026298	Grasslands Soil	MNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR
Ga0209236_11115064	3300026298	Grasslands Soil	MPDQTIAWKIRVKKGNYEVEVAGPSHEIVQKMFEDLVKKYMTKLASSR
Ga0209055_10566443	3300026309	Soil	MPDQTIPWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0209055_10678501	3300026309	Soil	MNVWKIRVKKGNYEVEVAGPSPEIVQKMFEELVKKYMTKLASSR
Ga0209154_10060296	3300026317	Soil	MNVWKIRVKKGNYEVEVAGPSPEIVQKMFEELVKKYMT
Ga0209154_10344771	3300026317	Soil	MPDQMNVWKIRVKKGNYEVEVAGPSPEIVQKMFEELVKKYMTKLASSR
Ga0209154_10712884	3300026317	Soil	MPDQMNVWKIRVKKGNYEVEVAGPSPEIVQKMFEELVKKYMT
Ga0209152_1000034222	3300026325	Soil	MPDQMNVWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0209802_10049488	3300026328	Soil	MPEQMNAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR
Ga0209690_10690314	3300026524	Soil	MPDQVNAWKIRVKKGNSEVEVAGPSPEIVQKMFEELVKKYMTKLASSR
Ga0209806_10020066	3300026529	Soil	MPDQTNTWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR
Ga0209056_101628184	3300026538	Soil	MPDQTIAWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLA
Ga0209156_104872892	3300026547	Soil	VKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0209588_10567492	3300027671	Vadose Zone Soil	MPEQTIPWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0209689_11365642	3300027748	Soil	MPDQTNSWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR
Ga0209180_103322682	3300027846	Vadose Zone Soil	SRAMPDQPIAWKIRVKKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0209180_103893222	3300027846	Vadose Zone Soil	MPDQPIAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR
Ga0209701_105001461	3300027862	Vadose Zone Soil	GSANGAMPDQTNSWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR
Ga0209283_102063592	3300027875	Vadose Zone Soil	MNVWKIRVKKGNSEVEVAGPSPEVVQKMFEDLVKKYMTKLASSR
Ga0209283_106739821	3300027875	Vadose Zone Soil	KKGNYEVEVAGPSHEIVQKMFEELVKKYMTKLASSR
Ga0209590_106895982	3300027882	Vadose Zone Soil	KIRVKKGNSEVEVAGPSPEIVQKMFEELVKKYMTKLASSR
Ga0137415_103095691	3300028536	Vadose Zone Soil	MPEQTNAWKIRVKKGNYEVEVAGPSPEIVQKMFEELVKKYMTKLASSR
Ga0137415_107757591	3300028536	Vadose Zone Soil	MPDQANAWKIRVKKGNSEVEVAGPSPEIVQKMFEDLVKKYMTKLASSR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F099704

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences