Scaffold Ga0209236_1095292

Overview

Basic Information

• Taxon OID: 3300026298
• Scaffold ID: Ga0209236_1095292
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1349
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020872	Metagenome / Metatranscriptome	221	N
F056503	Metagenome / Metatranscriptome	137	Y
F061195	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209236_10952921	F056503	AGGAG	MNGNSMHWVNRLAALGLVIGLVAGLAAVGNAQSVGGQAYSTYVNTPLGYS
Ga0209236_10952922	F020872	AGGAGG	MKREHRSLIVWPSLIAAAACTDQPNVSMAPKHPDFWLTPPPAQCPTGKWTGGGRIDPPRNPDTPDEAVHPEYFAVVLPSMTGKFTFGFNVFLGQDADGNCIVNKGEIEVNGHAQKIAWHVAIHNGVDAYDGRPVHATVFSDAHPGGYCLVVGIPDDYMTARENGKGSTEPYELAQFEVCDNDRGKPQKGKPGPDAMRWRSEHHGDTHLIYLTGGNVVEHGS
Ga0209236_10952923	F061195	N/A	SPARPMIERWDGQAAERIARVVCDDECFDLNEGTALPQTPRRAVAIPQPLAAG