Scaffold Ga0207694_10000001

Overview

Basic Information

• Taxon OID: 3300025924
• Scaffold ID: Ga0207694_10000001
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4078485
• Total Scaffold Genes: 3652
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2111 (57.80%)
• Novel Protein Genes: 29
• Novel Protein Genes with Ribosome Binding Sites (RBS): 19 (65.52%)
• Associated Families: 29

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001750	Metagenome / Metatranscriptome	642	Y
F001931	Metagenome / Metatranscriptome	615	Y
F002064	Metagenome	597	Y
F002279	Metagenome	575	Y
F002324	Metagenome	571	Y
F002338	Metagenome / Metatranscriptome	569	Y
F004159	Metagenome / Metatranscriptome	450	Y
F007132	Metagenome / Metatranscriptome	357	Y
F007491	Metagenome / Metatranscriptome	350	Y
F008640	Metagenome	330	Y
F009860	Metagenome / Metatranscriptome	312	Y
F012391	Metagenome / Metatranscriptome	281	Y
F012395	Metagenome / Metatranscriptome	281	Y
F014455	Metagenome / Metatranscriptome	263	Y
F016413	Metagenome / Metatranscriptome	247	Y
F016574	Metagenome / Metatranscriptome	246	Y
F024882	Metagenome / Metatranscriptome	204	Y
F038723	Metagenome	165	Y
F054123	Metagenome / Metatranscriptome	140	Y
F061939	Metagenome / Metatranscriptome	131	Y
F063979	Metagenome	129	Y
F066879	Metagenome	126	Y
F072395	Metagenome / Metatranscriptome	121	Y
F081682	Metagenome / Metatranscriptome	114	Y
F101402	Metagenome	102	Y
F101406	Metagenome / Metatranscriptome	102	Y
F103772	Metagenome	101	Y
F105410	Metagenome / Metatranscriptome	100	N
F105755	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207694_100000011117	F002338	N/A	MQELKAEKPPESPADSDPATRLMARLVEEGFTTDLSEEDWRSYGEIIYRRAEKISFAAGETVFIFTRVHDLNEKILRQTSEAVVNSYKARSVAGKALSVLQSTTVYHCLVADGDQPHNDLLTGYVTRAGGATFIPVIIVPDINQVIYPDLEEKVASVKPRVEYLQYLLGERRETVNMHRPTVQAMWVSLGVVLVLLLAIAVSLIH
Ga0207694_100000011326	F066879	AGGAG	LRLGVITLGHVHAEELSALTPHLQHLEQLVLDVPFDDPLSKHRAELNRAVDAATDDWLLIVREREIVDDAVACEITDAMRAQNAWGFRIRSIPMYAGKPLRIGVTDGELRLFHRRHLLRRGELGVQGTVVRLNNVLRSMSFETVAAHREYLEKNGVPHSLLRRLLLFVHHAIVTRARDANTLRYLWIEAGYDHG
Ga0207694_100000011471	F016413	GGA	MKLASMNGSVAGQDPATETILLSQRHASFLAKMSGEINPQMPKAFGWPHAIRTILDRIEESKIDLTVASSEYEIAQLAAGELRAKGRRRTASRA
Ga0207694_100000011473	F007491	N/A	MTTRFSSAASALLICGALLTHCTGGQESSAAEEQAPKKNGIAVTTTSPTETAVQPVQVDAKAALKSISPAIPIYAGARYRDDLTRRDSVMIRNQYGPTAEVYTLATDDSFPQVYHYYTTYLAQFRAFPAQSPYPAPQTWRTLEVQLNQAMQDPFIPGDMLKPGDKQVTLQVAETEAEPKTVIRYVVTQKPIAAAEVQMPKASGVRNAFDRE
Ga0207694_10000001149	F016574	GAGG	MLETDVIDRIRHIFLHPRPHVSISQATALLGWTRRQMSAAIDAGEVELWTTPVGKWFPRVEMMAKALEVWPLHVIEEALGAEADGVLPQAIRTAELRVRLPRHHIDMLEYRADQQETTVSGALARELDGIASAHIEELSSALPGFAEAMAWPSA
Ga0207694_100000011681	F002279	N/A	MSSAPSPTAPATTDWSRRVADSIAQHGAWHTYLKLVEARAAYPDDLSLRGYTEILRNTIVRDFLAHPKGMHSVPKLTAEFLSNFDRFNLTAQEGYLMSLIDGRLDLQKLLILSPFDQFTTLFTLAKLQHERAITVPQ
Ga0207694_100000011892	F101402	GAGG	MIRRLAIFCLLFAAFGLSAQDSPYAPTRPLPLGDTLLSLPTSHIPSEGTWEVKFTHRFNQSLDQGSFSDRVHSLWGLDSNADVGIGFSYAMTRDLQATFLRSNASDDIESSLKYVIVQEAPAIPFSLAVRGGMDWRTERDITNRTSFFAQAIVSKQVGGRAEVFAIPTYVTNAGQQVSGSSSGALFKHAFNVPVGAALMVRPGLSVVVELTAKNRDLPSSMNGGDFGWAFGLKRAIGGHYFEILLTNSNATLADQYVTSTYQGTPLNKSDIHLGFNIERRFGRRSPKN
Ga0207694_100000011938	F001750	N/A	MIPIVARYSSYNRRRMPKVTAEIPGELSRQIDRMIRDGWFPDQDAIVREALAHFVDAKTFLGDSPRMLHRFAADALNDSKPEVALKFVNRGLSLLPTQDATDFHLYQNLVELRVQILLVLDRNAEALTALEEAREMLPNNPTIAKWITRLQKVKSEG
Ga0207694_100000012000	F072395	GGAGG	MGVCNWCGSAFPLTRSTRKYCTTRCKTNACLGRKPSRIRAAEVEALHELLQAELPSAELFRERLRAIIAPHLPPIAAEGTPLVPRLD
Ga0207694_100000012032	F024882	N/A	MPCDHIGPAELIEMAETDLRERNVAPADGMRFRWSENPVDGMWASIVTEIERRGGQWIVTRLDRNREALPDGETGFRAL
Ga0207694_100000012037	F105410	N/A	MAVETYDWIDTTNLSALVANFARVHMLLSMFDGDPQKWIEFLEWNGTDEERRRDLPFAEDLKRRIAEDPEYLNRLRHLVRDFSTLV
Ga0207694_100000012201	F002064	GGA	MTAIETAPAILSNQQLNTVFQYTVEAYKTFEKLAENLPNPLTANMFKQFAVDERATRDLIEMKIAATGTSRSKVTLANDLAFQDILEGDLSYRETTEFLIARERTMERNLAQIGRGTSSIDRAFLVYLAASKRAHIVELERELELTKLDRDWFKREDAETRLVRGAATE
Ga0207694_100000012238	F007132	GGAGG	MTRQAVRTTAGKVLRSDDLIADEKEVAAGFLKANPHFGNPHVVRCDWCRETRTLFRDENEGPFKLTTHGWLCETCNVRASSQEVKF
Ga0207694_100000012273	F101406	N/A	VLPLSRGFIAALGGIAMTLLAWFGSWAWPGWPASIAIDLLGFTDFAEFPRFAKSGVVVLLIIINVGTWAAVIRAAMLLVRKSTSPAPP
Ga0207694_100000012320	F061939	AGGAG	MNRTRGILAAALLVLFATGCFEIEQSIELKKDLSGTANFKLGVDMEPMITIMAKMQKEMSGDKSPLTKADIAAAKAEFKKKETKSTTESEDPRKQAEGGLPPGVKLLDVSVTEKEFGVTTNMKFAFDKLASLVGVKLNSKKEGEAGGDPTKKSVIDSPFQGLEIAETASTITIHTKPQNPADKVKSEAGEAGPKLDPETEKMMNDAFKNMRIAWKITAPFEVVSSNATRKEGKTLIWEYDWDKLQKLAASPKALDDLGVSVTYKK
Ga0207694_100000012508	F012395	GGA	MRFDWVNILATVIFVSIVVTLILAVASYFAYKVREARRPKTASELRDEGKVKVFFNEYNP
Ga0207694_100000012781	F103772	GGA	MKMRITSLLLLALAAGCASQSVPEPPEPNVVEIVSVPNHASVSLDCGSGTVVKGTTPLRVDVPKYPEVCTMEVGADDYRPLRMKFNRGLVLKQGVQLREDASHQLDQSASTFDMLLFPLQNLGDRIQNATMRKIRADYRLEVKLIPIAR
Ga0207694_100000012935	F012391	N/A	MSEDEKGATEEDTQKIEVIRGAEALGYEGAGREEHSGENSPTRANDPRDELADNKPEDIR
Ga0207694_100000013102	F063979	GGAG	MNYDLAMMALDGLMRTPLTVRADAVGVTFTGEPAAFKELARLCLLLGGASDADDSFELQPNVHVTKGSPLVKLELEA
Ga0207694_100000013107	F001931	N/A	MADEPLHDQRTQILSGVVKTLLDDLKSGAGDKDRRRQVEEWMRTLAEKYPEFQIESGLRDYYLAEAERLRIDFEKAAELNEKLALGRSIEGFLDRAADYAKRIAEK
Ga0207694_100000013274	F081682	GAGG	MKTRILITVAFAMCAVAAFGVQSGVVDHNPPGCMLVGEMPIMQVQTADEGLLRAYFRRQGATDWCFVDGKNLGKVSQVTLPKFDPNEAIEYYFIVLDGKRVVAKSPKIYNAKNEQHCDAPFARHAIMLTLECLPPGTNPISMAAGYAAKTIIGGPPPSPEKPEQTAANSSPKN
Ga0207694_100000013350	F002324	GGAGG	MGDIKLFQVCYEGELTVAVSDAMRRLGAEPNFDQSWSVWLPEGGHAELLVRYLRIEVGDEARVLIGCSQFTKTRDFLLIRHSLTPGADYSELHDAIARLGVVVDLPFESTFVVQSDDRTDVNTLGRALGELCPDDGLFVTGISHDWAYCDGTTSKMYVAEQEPKSIQFRTF
Ga0207694_100000013464	F009860	N/A	MPTSIRQIEFLARSIVNRLEDRGLVEFGDAEIGIDVVTKTLEDNFAAYDAIEAEARIRLAKTIGTREPSEIEVTEAMKRVAAERNVTL
Ga0207694_100000013549	F014455	AGGAGG	MLHFLKKLLMFRVGQKTTRGVARSIGFGKIATIAGLIGGYKYMRRHA
Ga0207694_100000013575	F004159	GGAG	MPNTRDDDHERAAAGMDYDFPIREKATQLGNALAESGPEALFEEIENLLPESWREHIRTFPIAAVILGAGVGVWLGMRKGDEIIAAGTAMITSAAMQNVTNVMKNATGGGDD
Ga0207694_10000001576	F105755	AGG	LVLIPSHPRRTPAGIWLVFLLLLVALPACTVNVRRYAFNTALENQRHIDKLRIGQTLSEVERIMGKGPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRAAPWESD
Ga0207694_10000001657	F038723	AGGA	MSDQRFDMLSSSESGLTYVREKRGGVMRVLTESELADFNDPPPCPQCAEQFGCEHFNCAGEPMLSEDEVESVAPPQWIAFAKACGISRQDLDRLKLIEEHEGEYRVAPGADMRTQEIVLLLNER
Ga0207694_10000001660	F008640	AGGAG	MNKLTRISIRRIFLTPRPNVTYMTAADRLGISFLELKAEIAEGTIVAVSTGRGMRVSKEEMIAAAMRTWPQAVIEEALGDDAARVLPEAIRLVELRARVPRYQKEMLQWLARRNQTSVDDVLTRELEDVACAYAEEIASDVAGFEMAMSWPECAASVAK
Ga0207694_10000001940	F054123	AGG	MNILHAITLAALLHHAPAAPAVTCHTGTVSYKFVGAPGATFTYAGAKYSIPPSGWIELIDGGKVYLAASGRTLPLDVWPIDAFGTRTVPVQQAETATDNSTPSTINN