Scaffold Ga0207646_10000028

Overview

Basic Information

• Taxon OID: 3300025922
• Scaffold ID: Ga0207646_10000028
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 227768
• Total Scaffold Genes: 243
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 190 (78.19%)
• Novel Protein Genes: 27
• Novel Protein Genes with Ribosome Binding Sites (RBS): 20 (74.07%)
• Associated Families: 27

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002133	Metagenome / Metatranscriptome	590	Y
F002161	Metagenome / Metatranscriptome	588	Y
F002500	Metagenome / Metatranscriptome	553	Y
F003037	Metagenome / Metatranscriptome	511	Y
F003458	Metagenome	485	Y
F005700	Metagenome / Metatranscriptome	392	N
F007213	Metagenome / Metatranscriptome	355	N
F007216	Metagenome / Metatranscriptome	355	Y
F007915	Metagenome / Metatranscriptome	342	Y
F009672	Metagenome / Metatranscriptome	314	N
F012009	Metagenome / Metatranscriptome	284	Y
F022852	Metagenome / Metatranscriptome	212	N
F023823	Metagenome	208	N
F028476	Metagenome	191	Y
F029697	Metagenome / Metatranscriptome	187	Y
F030030	Metagenome / Metatranscriptome	186	Y
F036630	Metagenome	169	Y
F042845	Metagenome / Metatranscriptome	157	Y
F043312	Metagenome / Metatranscriptome	156	N
F046962	Metagenome / Metatranscriptome	150	Y
F061700	Metagenome / Metatranscriptome	131	Y
F069956	Metagenome / Metatranscriptome	123	N
F073400	Metagenome	120	Y
F075928	Metagenome	118	N
F076915	Metagenome / Metatranscriptome	117	Y
F088676	Metagenome / Metatranscriptome	109	Y
F091786	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207646_10000028111	F091786	GGA	MRYMARTVTKSQASKRPVKSAKALSRVRKRSVSHTRASPRVSTRKTVSRTGHQQISDTTYIFECTRPGCGYRIPREEKAELGSVRFDLKCPKCHHREFKCLGKGDLPASFELPVPTTNIDFDSIRPVDLGSN
Ga0207646_1000002812	F046962	N/A	MEEIASRGYPIETTSQPVSPDTLTDDQLKDLLAELISSSASLNVRVWLDGVYTDIENTGGRREWMKGREVYFKVEGKVDGKNGPEDPSPGRI
Ga0207646_10000028120	F012009	GAGG	LSPARSAVRPVTPGSVKILMMVEAGVIGFLAYWIVSEYVFNAYFHDYVDQLLGTHGTTFTAALGLGVGLAGSAIAATLYRNLQHAKSRLETIAAPKIRGAVEKILSNLPTVEEPQRASVTRAPALSSIAPLSPSQVIAQVPVSREEEKKSNDVKS
Ga0207646_10000028123	F029697	GAGG	MLLMGLILLIFGVIAEAMYIIANKVAYSGIVADAYLTGGVVFIMIGFVLMLASVKIPKLRVP
Ga0207646_10000028124	F043312	GGAG	MTYDFLARRGISREDLSSRFEDVEALLVQLYGQGGRSVMIGTLAKLCEEYSIPLNLGYSDTLSNRMSQLSEDILMRKLTPKHFRKDVDTTTFEDNTGSYADWTD
Ga0207646_10000028125	F069956	GGA	VDRAEFDSVIQVSLSNTLKSVGDDCLASVQSLLGGEREPVESLVAHLGDIDSVLDELFGKFSKIIKHITILQASSQLKIDPPSLGGSLFWMVEELRSTLWKGQS
Ga0207646_1000002813	F042845	GGAGG	METRKWKAFLRMNGETAVDSGQDIMTEFRAMVEYLKWIGVDYSMVVQVESDQPERVQSLAFEQAPRRRETEQPGA
Ga0207646_10000028137	F028476	AGG	MKLVTILIDWSKLKPEYVPGKCNIGRRGRAIRLTTGVVLIAISIILGILVLNPVNRWLSLAMVFPAYVGLLACLEGSTSFCVLHATRGTYDLNEPQGFASKRSKTLQKVVSEDWKKLDRRKALKMHLEALAGAVLLAVLLSLA
Ga0207646_1000002814	F030030	GGAG	MAKFIMSIGDNAYDILSNEAKNRDVTVQQLLRAVVVPDWIRQNADGQPPAEQRSNLLQQSIYRRDSRDSQMLVSPVARLRH
Ga0207646_10000028143	F003458	GAGG	MAESRIPPGASLLLIGSGLYWILSSQLISSFTVLSPGLFQAAALGTSLIMIVGIISATVGLWIVKVDFEELRDLFARRDGWIFTVPLALVAADIYLTLIVLSTNSQIVELNPFVSSAIAIGATALVPFIISYLALSQGLGLFMLRIGSYLFGPLKSARYLPFVSICGAAAFGPASNLVLFLDPNAGLIAYVFGALSCGVLSVILFTRVDRSQESPR
Ga0207646_10000028146	F076915	AGGCGG	LTTTLAPGTTNAVQKQKPTLEQEVFRLKLQWIMAKNDDEKRRISEQIRQLIGSTPPKSP
Ga0207646_1000002818	F061700	N/A	MCDKCHRFFVINYEKNEKGEVVEVGHELDIRVKSSGVVRVEGDEQQEGSERNPPIRKYQEETCW
Ga0207646_10000028216	F002133	GAGG	MAILVKVPPQILEDLVGAAISKQGNIYRGELAKLIGASKESLDGKTSLYLISLMKLCGFAEADMAKVLKKSRIVNQRGAVTRDISAGEELKGVIDNALEGFQTLISESFKPIGSENRTVPDQQSNKRRTDSLRNRESD
Ga0207646_10000028219	F002161	N/A	MAAHAATRTGHSDIHPGQPRIKVPYSKNPVFVAEGYKPPVVVGRSFEYETSPENADYWQTLSLAYRQYMKKEADTRAIDLRLLIDERRSGAFRCVGCSKPMVMRELFANGDRVYQCLNGDCVKRIIRYQYQAQTGRIVEVA
Ga0207646_1000002825	F023823	GGAGG	LADESKSAFDQALVDSTIAALDALGPTVKESIFLLLQRRNSITPDEIPKLVGEFVKALQEVLGPTSRVVEKLIIAGLIARRQVPANMAQGRSLLEVVGSIRLSQVSQS
Ga0207646_1000002827	F073400	GAGG	MRSDQLKRFLNSDVVGQLTNGLFFEGHVQDRSGKARVFDQQGEVPRRISAIRVRWLAKAVRHC
Ga0207646_1000002828	F022852	N/A	MTVTIPYSVRIPKELLDEMRRLYDRMEPPKPTFSAVLSHIVRLGWDSYKAQKNSEIGLQKVTVTSYPKRMQEQAFQR
Ga0207646_1000002834	F009672	AGG	VSARLLDTSPRWLSLTLGCSAGVLIIAGIGFFFGQLALFDITPYTLLLHLVLSLAVSSSILNLRINIKPERKPLLAVGVAVVVGSIWSSVQQWIGYFQTGTVSDIILIAGATLMDIAGGCVIYSLFHLNVLKNKSSV
Ga0207646_1000002843	F007216	N/A	VALVLPSIALWRLLKHKASITGVRAGNLVRLNIYFLSSILFDIFRNLGYSWAAFGSGVSSGLVFGVIGLTAASLYFCPECNTLREAWSKLKSRRSLLVYEGVVFAWVGLNLSLPVLFLPFTLVLLSVATVYPTSLFLSARRRARPPHVRNSMALLSVTWALFVTIGTLLFALGAQPPVLPVSVPYGWEIAYITGSVLFFLMSTADAFTLSAVRFSSGQLVPETIVKPGHRYLILHDSGKRAITFLSSTLKGLIDSGARVVINASNNGWLVGNLSLYESRFNEWKQNGRVVVSENVVGHSFPHEGLTDRLSYGPTSTVFVNELGQENLEGVVSPQDSGSSERHQEPAELFLLESSKAPRPQLTEFLRRNTGMELLNLSESTDPFSSLVDLDHQKIRGSIVLLEYETSSDYEGVVDKFLAEGISNAELCVLFTTKSSKLYRAIKGKRMIKIIAASSLISVPDELPDGEMQIPDKELGLVAAVLSDFIDNSKNSGASFVFDSITELIRGERWEQVYSGIKQLIDLLSVPNATTLFLANVNTLDPRFLGALHGAFALQLRLDDNGLRAIKVPTN
Ga0207646_100000286	F003037	GAG	LTCSNLWVEFKCPLCGKDLDDDKTMANFLVCGDPSHGLLRFFTGDGCYFTTNEQVAEELMKKGKRVHIVDPKEFFGNQTINLE
Ga0207646_1000002865	F088676	AGG	VIVTVLNDGPQDENVDGLVVRLILVGLLVVVFIVIGPATFGAHLNESPALPELLVPPLPEKVILRGFADQRAFGVPAEAKPTAA
Ga0207646_1000002866	F075928	N/A	MSSGIDELIAALPRVSDEQLEAWFTMVVKTKTELVEAKRFLNGPLTRFHRSLLAQIREREERRNQIE
Ga0207646_100000287	F007915	GAG	MPNIMSLAEAAKPALPSSTIRSYAMIGIVLYAFGLVLNEIGNGLSQLWLVPYADTISALGFVIALYTATLAGLGTRLTVLIGLIYGIGIFYVSEPDSTYLASGFKIGSYTHDVGLGLIGFTMIFLIALAFYLTRAKAAHGSPSRQDPGSAS
Ga0207646_1000002873	F036630	AGG	LATQRPAVTTGLILGVLAFQILVLVILVFFPHIPDPGLFNLNTDIYFLLSPLSTIFLLELLYAWLLRIAAKQATRYSSRARSIARFLSEPFQKILASVGARSLSESAKTFKILSRPRLLLIISIATSILLAFVPYRPDLNPAGTLVGVDSPIYVTWISQMLARPVPQALQYSFVGGLDGSRPLLLIILYIVASLGVSPTQIIEYLQMVLAPLLTLSTYAFVRFGQGNANFAALTALFTPFSFYLPVGLWGGYYANMAALVLAYLFLTLLLLFSKSPSAAKYVAMFALSVALFLTHPWTWALITTTGLVFALSLWRETHLTIHLKSIAGILITGVALDILKSTLFATRSVAADLATKLPTSGQVSTFWINLVDGLLYTHSGLLASWIILGVGLFACFALRFKDRFERLILLWVATASIPFLILDSYNQTRIVYDLPIPVLMATAILFFLPLIGNRKVRWPGIIILLILVTCANYALQGILL
Ga0207646_100000288	F005700	AGGTGG	LTYRTEYTLGFLALLPLLATGVAKGTGWLVTIIVVYVGVPLLIWSLLVDRLASFVLRIICRLRESSGHQYYFERQVGKPGISRRLLRDIRVLVFVFFLSALIVPQVTQVNPQNLVIVSNAFIYVAIFLLAIPSSIHVLLWVLEDSGLRCHNTTRLTVTVPAAWTSRWLSSLGGIGAFVSFAIAMGGSLDRAISLGFTLMISLLPSCILAPTLFYRRLEPGIIAKIRQSKAAITMARLFPQVSAPSLPSPSAPTLRSAIVTEQTKQTTEPHS
Ga0207646_1000002883	F007213	GAG	MVATFQDTVGYCFRSTLETMGTSVRDVVYDHLRRKGIPESEIPIQFDDVVRVLDESFGGSARVIIYKTLVELYQQYSMRIDFTYQESLRDHMSLLRERVVVDHIIPKRARIEDSRLEGRLSLV
Ga0207646_1000002891	F002500	N/A	LPITFDDIELSVIAALIGLAVTLPVTYLIVDRIIDNNEKKKLVPVEKLAKERLRSKLGVGFLTTFLITLVIDVTSASREKSPIPKDVLLLHIEKLKTAQSDLETLLGVYSNVLGVEISRMTTDVVLQIEHLQEDFEYLAETQPRPPTESHASHMEQVLLKTVHLTKGELIALGTDDTQIRALEDWLTQYTREGRPSPKKEQPIAVRGGHTI