Scaffold Ga0207646_10000003

Overview

Basic Information

• Taxon OID: 3300025922
• Scaffold ID: Ga0207646_10000003
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 537256
• Total Scaffold Genes: 589
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 432 (73.34%)
• Novel Protein Genes: 42
• Novel Protein Genes with Ribosome Binding Sites (RBS): 32 (76.19%)
• Associated Families: 38

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000186	Metagenome	1702	Y
F000611	Metagenome / Metatranscriptome	987	Y
F002367	Metagenome / Metatranscriptome	566	Y
F002498	Metagenome / Metatranscriptome	553	Y
F002993	Metagenome / Metatranscriptome	514	N
F005345	Metagenome / Metatranscriptome	403	N
F005875	Metagenome / Metatranscriptome	387	Y
F006078	Metagenome	382	Y
F006340	Metagenome / Metatranscriptome	375	Y
F006583	Metagenome / Metatranscriptome	369	N
F007853	Metagenome	343	Y
F008485	Metagenome	332	Y
F008873	Metagenome / Metatranscriptome	326	Y
F009059	Metagenome / Metatranscriptome	323	Y
F009132	Metagenome / Metatranscriptome	322	N
F009674	Metagenome / Metatranscriptome	314	Y
F012005	Metagenome / Metatranscriptome	284	N
F014244	Metagenome / Metatranscriptome	264	N
F016129	Metagenome / Metatranscriptome	249	N
F016790	Metagenome	244	Y
F018334	Metagenome / Metatranscriptome	235	Y
F021281	Metagenome	219	Y
F021953	Metagenome / Metatranscriptome	216	N
F022626	Metagenome / Metatranscriptome	213	N
F025705	Metagenome	200	Y
F027476	Metagenome / Metatranscriptome	194	N
F028125	Metagenome	192	N
F028751	Metagenome / Metatranscriptome	190	Y
F029079	Metagenome / Metatranscriptome	189	N
F031428	Metagenome	182	N
F032621	Metagenome	179	N
F033736	Metagenome	176	N
F036188	Metagenome / Metatranscriptome	170	Y
F036634	Metagenome	169	N
F071054	Metagenome / Metatranscriptome	122	N
F085526	Metagenome / Metatranscriptome	111	N
F089795	Metagenome	108	Y
F104542	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207646_1000000310	F018334	GGAG	VTLHEPEARVQVAELKVPVELVVKVTVPVGVIAPAPEESATVAVQVDATLSRTLAGEQETVVVLVRIVDASVKLPLLPVWTESPPYVPVMRA
Ga0207646_10000003105	F005875	AGGA	LSRSVMIIGLVGGSLFLLAGFLELLPWPVSGSIGGVLLGGWFGGEIKKRLDKVNEKGKETKVIRFRKKALLEDNVSEMRSAGWEPRWESYHETQTGLLVRRIEYSVVMERTRRKLELSGLKRLSKFLFPSK
Ga0207646_10000003118	F028751	AGG	LHARQSVTLWSNMTRKRVLVTLSVPERRNKAAQALIIAGLVFLIAIPVGATAALTTSRGQNGSKLVPNCLALRPSQASVIAGGSGLILFSCGGGPALTVGKSDHFRPSFALPTGYTDLRIVSHGPGVTDCSNSPILVSGQLFDLTGPGGFDYCAGYANAPNTGLASFKVVWSK
Ga0207646_10000003121	F002993	AGG	MAYGLAEGFRKTAVRLGGKKKSQAVVIATFGNHFTLNDALEIFRKEGLTFETEKGHIVKIFLDKNTKERAEQVRSIIRENFGYVEPL
Ga0207646_10000003125	F014244	AGG	VAFGEQTYTLLSEEARARGITIQELLRAVVIPDWFKAKYEPVPRQNPIIERRTREEEAVVHSFSNKLRY
Ga0207646_10000003126	F006078	GGAG	MKALKTATLGAVSPLEPMVKVASQSVFYALHTRDGNCESRCGASQTRVAEIVFGVEIVEWDLCFGCLSQTGFLEYFNSLPFATPREAEEVKILLGISNEAFGTQNRAAPI
Ga0207646_1000000313	F018334	GAGG	VQVAELNVPVLLVVKVTVPVGVTAPVPEASATVAVHVLGVLSRTLAAEHATVVEEARMVEASMKLPWLPLWLESPP
Ga0207646_10000003148	F029079	GAG	MPQRSEELTQSSLAEILGKMSEKGYALNFDVTLELATPTLKVGTMRVHGKLESAALKKR
Ga0207646_10000003149	F006340	GAG	MSQPWTGGGNLRAVRGATASRYVALVAVLTALFTAYGYVSSVELRSLTRSLDLFFLLPAFFAILVSLTGKKWGGTVLATIIGLIFLPTPSAGSNFSPHIAASVIVNGLVFDLYLQHSGNSLLDPSRKHLVLAGTLGNLAMAPTGLLVLQAVGIASPAVIWAIALIGDTLVGAAGAFFGTIVVERVKGLQARRVLEAKSDIRVRI
Ga0207646_10000003151	F007853	AGGA	LSSRSPVEQKLLESKLEKALDEAWSKVNIALDNAPKPSASFAMEVWLAAEALEYSSFLFNLAYGLEDLKPAVKARKHEATLVLIKDSIDLLKRTREGRHKSATDAYVNLRTAADYLKTAHLDQIKKSTKKKDSV
Ga0207646_1000000317	F002367	N/A	MSAWPTTVGVKVTLHAPEARVHVAELKVPVEFVVNVTLPVGVTAPVPDASATVAVQVLGVLSRTLAGEHATVVEDARIVEASVKVPLLPVWTESPP
Ga0207646_10000003183	F016129	GAG	LGVEDEAQPKKSGSRRYIETLLGWHGEESAGGNLYQTTLLTSIIEYGIILFFGIWIVSEYFANIYEQQYFGSFDPVFLVIVLMIASAYGFTRLISTLRTVLKPAKKTSRSEDDY
Ga0207646_10000003186	F032621	N/A	LTSSTGSNIAVQTAKEVHIGRLPPASLVYWLRLGFGVLAGVIYNLAGFGSLGVGLGTLSMITVGIGVYSVSIFLVKNLLGYGPEILKGPNKHVTIGMGSYVIWMIFTTILLYTVLNPHPS
Ga0207646_10000003191	F009132	N/A	LVGPENVLAHCAGVNYQVYVTDTRLLVGKRFATGEKFMNVPTASINTLELITKSLLPPLTFAVLGAIASFLIWWFPGTRMLPLPVFPYDVAMLAGLVVFVGSLIVAWWRVGIAVLRIRVDDSQNPITVKLVSTSKAEAVFKALKG
Ga0207646_10000003193	F031428	GAGG	MNAARLGESDLAKILRGVAVVLAAALMILPAYINYEGWKFGFSPVVMMAISLQAFAIGIVVFILAVGKDRLAPKSQPQ
Ga0207646_10000003203	F036634	GGA	MIRVDKKDPLSAIRAELNSLALHVAKSGYNAEVKGKLREIAVRMQKLAE
Ga0207646_10000003227	F005345	AGG	MGLRFTLQNEEGVLLDLPLSESDWKPRVKELVMKELGESEADIDSLCEICDFFSNKRRVQMLNHLVKDCNNSASFTDLLKVAVNPKYISDLVSKSSRRELIVKGSKGYSLSPLGLGSFLLLSLATRRLLRETNSIIGDDKSFEGQ
Ga0207646_10000003289	F012005	GAG	MKFGLVVGGALLLITGLLAYSMIPNFHMVPLQSAQTIVNLKPIAVSSASLSETPQNVTLFPGKENDLLVNLTVSTQMGSPSSVQFKLFPEGAFQSCMLSSQPRGCLVNQAVSNASLRIPLNASTTYYFGFDNSGSSSPKQVMLSASLVGSSVNTIVARDGGFNFAGLGMSLIGLLVALYGVFAKTVIPWE
Ga0207646_10000003294	F085526	GGA	MVDFHYFIFIINADAAVFGVIVFLMSYIALRLVYRMWRRSLRCPHCGEVYAAKHIVHIPEKTMPNTLWT
Ga0207646_10000003318	F006583	GAG	MVNCSGCSGIIHRDEPVSAAFSQEGKRSYFHKGCEEKAEYLSRWREEAAWAFRPVRLIVSDWEACSPKKHLGVWQSIFIARRDEDIWCPDCGLKIARHEGLTCTACGSHAIVVGVESTKMVFTHRQPLFKLLLHCTEKGEDSTSYAISSGFTPVAITSRRKGESTDSQATVMMLEYEPKENLKKGLKV
Ga0207646_10000003340	F022626	GAG	LKVQKPNWFSAIEVRDLVQRRPWSILSWGAGIIALAFIGYYGILSIGNPPADVGAQFVNAEFPPPSISPWFYGKPITWFIYAAFLYWSAGLEAQRIHFLNFSDRTRRFLFIVTALVAFGAFYEIFYNFMIWSALEVLTQSCSPSPCSPDVISSRWPSLPKPLNLVFVTKVVVLVFSLSVYSLWYLYRVDKEIERRGLTRPVASSRQDLYDSETMRTSPMTRAYSSVATTNIQDPPEAPQP
Ga0207646_10000003352	F002498	AGGA	VKASERFHSPSRGIESLSKEEHGLFFDAMHRLGLSNEVKQAAVALYLDFKRRPIGEYNSDHKNLDIFLIASISLAAKVIGDLRTDQEFETRMFVSREKLVDAEERIIKSFGVGDSIIPLPKIVFQLTRRQIEIMAESFSERQLVTSAEKEELVKRSYEYLDEMVARGTAPKMSYRGRAAGVMLNAARDLNLQISEMDLAKAAGFDKKSVAINANFIAALLKDEKNSTEATEILGK
Ga0207646_10000003371	F028125	AGG	MRSRASLARMPVFLLIGIILSSTPLVSNMPPSFQFSAAASLMNPPTLNTAAINASMRQVLSWAESRVLPNGTATLQGTSNNLWATSLVGRTMTYLQLEIGNTTTQTIIQNMTKAEHILLQNPSFISYGIWSPVNLNSEFQLHLDAQKFLSRSYGLTLDPTARSDMINVTQNMHLNLPSRSDYFDTVAWTLANAVWFAYYSGSTLPPTSDYTAAVQDLNTNYNQTGATSAARDPLIDFDKLLRFLKPITYTDSYFRLQGNSLSQTYQTLETGLAGQLVTRQGSDGNIVSAEPYKSYLVEDFARDLDSSVYLHNNLTYAYSAYRAETYLTNLYLQSNGNFSLPDNGEGLYPTGAYHMISIANDLRSCSSNAWYNILVSSSKLLNYTLTIQNPDGTFRFFLNTTNPGNALTTVNTVSGLVDSYLVIHDTSVLSPETPVNLASCQTISSPSPLQNLSWLYIVIPLALVIAVAVVYERRHRAKYRGLVEK
Ga0207646_10000003374	F021281	N/A	VPFGPLTRKLFFEQASSGYQVLRAYRGNLIFGIVWSFTATVQAGLHSFNVGLALVAGFGGFVAGVVSARGTAERIEKNGGEYRASRKRTLIVVGLGLAFGALLFYLIFSAAISLNTLLEFYSLYVGIPALYFGIAAGFRMSEARNEKEIHWEGQTFYSLPKGLSLQEKYQYRAEQWYRLRTRNSGQQEAPSKV
Ga0207646_10000003379	F089795	GAG	LAKPVVSKPTTPRPDGITFLGGIALLAGIVLLVAAITFTLPYPDGWDNGPGLFGVWIMLCFGYFGFGQFVPALLRPIGIPIIVILAILAMLYLAAGIGLLSGRRWAWTLSATLAFFGVASSILQAVTLSFYDFFGIPGLIVTLVILVYLASPLARNFFFKRPLSRPSVLLIADD
Ga0207646_10000003431	F009059	N/A	MKHHHVPAIERALPMERIVAAFAERFDDPYLDPMAELSFEELTAAFPDMPKEELEEGLSHWTNHSGEKTLSTKTVETGGAETRVWFVHGLARHRIDPSSTSSGRVALG
Ga0207646_10000003442	F104542	N/A	LPFLIFLVVVGIWTAAGVLLSPWSQDQIGSGGDTYYFFSYQIWYVALSALLLLSFVSLPVLSFYHQSKIVHDKKASVSMKIISVCWAFFGALSFFQIAAGGLFLPTSETIGLVADSFLFILIAFALREPTILGRIVTSGETVSQAVYSKVNTDTIVLYNTESDRRSLVETFVKDGLASGQDIVLQVTKGEVPFYRAVLKGSALTDSSLGEHSVTIQPLEGTVAPREINGSLPTSVPTERRELVDLDELDPDQCRDIISRISKPSNAPLAKRTGRIWALNVEGAHPRVLDLLQEANPTARVIDLAMQQDAFSSMINMEHEDILGNRLLLEYEPTSKYEEIAQKFAREFQANVESVAIFTSAGSPIFRKFRDQRNISLFSFSTKTSSPARLSDEQVLLPERDTSLLLDAVDKLLQALAKKRIGIVFDVFTDIILSQGFEKAYGVLSSVVEMTESDTVSILVLINYEALEPRVLGAIQGLFRSQLRFNLESLKVVKLQGTRQEDNYKEEPLAGVQNSAGGIRA
Ga0207646_10000003488	F033736	GAGG	MRRWFTNQIVMGALVVLAVIVAGFAGYALGHSGGYAAGYSAGYTDGNPDYAKIQASVKSSEVNYFGYVQQVLSKLAVESQNRSVKSPSAGFDKLYSVFKAANDSSTMFGQNMTFCNPTAKGYFQATATNTGNANFTNLYQTICLYYTKLANDYTGPLTSFTLQNLSNDFTLLSIDLLKLDSVIQSFPQ
Ga0207646_10000003492	F027476	N/A	MVGWGFAFGRGIVVLLWSIVWAIVAGIIGALIIGGSLTSLISNPTAVASNPTGVVTGFLAASFLGIFLIIFIAVIGLYATIVKVAVDGALSQLEKSGQYNRSSYATASMGSQPTMVAPAMRKFCANCGNALPGGTAKCSNCGASL
Ga0207646_100000035	F018334	N/A	VTPQLPLARVQVAELKVPVELVVKVTVPVGVMAPVPDESATVAVHVLGVLSRTLAGEHATVVVVVRRVEASVKLPLLPWWPASPP
Ga0207646_10000003502	F009674	GAG	MLRLQWDDATIVFHLKSAKIRNARKILDSVLDEAKQEAIARLNV
Ga0207646_10000003510	F036188	GGTGG	LLQDRQRSGGKISPGLLREARLRQRDGEWLSSAKSVVLRRYRGKYVAIRNKRVIAASTTMKGLYAKIDKLNPGMVLITKVEKPTLLVYVQLH
Ga0207646_10000003515	F000186	N/A	MEQELAFNLENDRIHYLTQVEIPITTVDFYFPIEPRPLIVFVDGRVHLKTSQLTKDEELRGLLRKRGYRILELYYDGYSDKRRDELYEEIMYTLGKE
Ga0207646_10000003520	F000611	AGTAG	MQTNMNFPTYVFATVNPGRATKVVDELKRNSQIDIIAPVSGRYDLVLRLKPNTPHNIYQTVKEIREISDVRTTDTHTGFDGMQPTRKLESQMALGVSVLTCEHNTSESIIKQLSNIPGFIEASTVPGQFDIVALWQAKTSEEIVKNSVERVTTLPGIFKSETLLAYAPFFKA
Ga0207646_10000003524	F008873	AGTAG	MTERKKEDEKKPVKLAPFVEPQLFVAVEEANRRLKEIMKVTDPTTGLYRSIQRITEVSEMMLRRQDQLRKLYEPSESVRKYLERIRQLVEQLTRTKMDELPSMSRTLIPQLEGEVSGYVETFERALAEKEKEIEALKAELEALKSKTKNQHPV
Ga0207646_10000003531	F025705	AGGA	MQSKKTVKEPKIDKEFRRIAEKNLRKDRELVEKLAKI
Ga0207646_10000003532	F008485	GAGG	LGKLQTPKENAEATLLALKEFRRYLEGLEKDLSRTSKKYSNREVAQGVGFVAAGIHEALNYLEIVKKVIVKTERVVAKRNASTENATLPSGPS
Ga0207646_1000000362	F016790	AGTAG	LINEKSSAGTASTSTRSSRNLITVALVLAAVTAALHLYIGILVYGIPLGIPLILIALVYLGGIGLIRMNIRRDLWLRIGIYWVIIVIALWAASAAVNAPNTNIPLAYVSKAIEFILLGVLLRLRTASRP
Ga0207646_100000037	F018334	GAG	VTLQLPLARVHVAVLKVPVELLVKVTVPVGEIAPVPDESATVAVHVVDTPEFTELGLHATVVVDERIVDGSVNVPLLPVWTESPP
Ga0207646_1000000379	F071054	GGA	MEASYLDQPFNFESIQETLVRNSQVFMGEKIRVIFDSIDKLATKVPQKDFVKSFTELASKLKDSGATLIVTVDLSELPKDLAGSLNDMADCVADLSKDTSDPNERELKIQRLNQKSAKIDAETFEIDAGKGLVFV
Ga0207646_1000000385	F021953	N/A	MPLPKQGDTVKVTLLNRETIEGVVEWVDGDGLWVKGAERSRWVPLEAFTAPHESHPIDNKEEQASAQRDAGES
Ga0207646_100000039	F018334	GAG	VALLNVPVELVVKVTVPVGVTAPVPEASVTVAVHVEATLSNTLAGLQDTVVAEDLIVDANVNAPLLGVCVESPP