Scaffold Ga0207684_10000003

Overview

Basic Information

• Taxon OID: 3300025910
• Scaffold ID: Ga0207684_10000003
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 766933
• Total Scaffold Genes: 806
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 539 (66.87%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001373	Metagenome / Metatranscriptome	712	Y
F004707	Metagenome / Metatranscriptome	427	Y
F007397	Metagenome / Metatranscriptome	352	Y
F009111	Metagenome / Metatranscriptome	323	Y
F012763	Metagenome	277	Y
F036989	Metagenome / Metatranscriptome	169	Y
F096956	Metagenome / Metatranscriptome	104	Y
F104013	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_10000003232	F004707	N/A	VSLYGIVADLRRKYPTPAATETLDMAVAELGRTRDNLKEAVANLSSKPLPPGGKPVLDELVERAREEGVYDLDYGPDPYDKPPLEPLDEGTFGIGALLVVSSLLGIGLAAAAVYLGINAILNTSG
Ga0207684_10000003327	F096956	GAG	VRFLHKMGGTSEVAKPVNARPVVIKSLALLAARAMGPGPLRLKMVKLAHDLDDAHVRRVA
Ga0207684_10000003357	F104013	AGG	MAMAEIPAIACTLSASDLKDRQGAWNKLMDSGLVAREVVPGGIRLSPAPGAAAALIELIDLERECCAWIKFEVGDGSVATLTTEGEGAAVLAGMFESR
Ga0207684_10000003411	F009111	N/A	MGVMALGIAAWVAFYLAGHPGLDPFSEGVAVLTAVISFGFGAYVLIRRVRRGPQL
Ga0207684_10000003750	F036989	AGTAGG	VATQLHIRVFSDPKNRWAALAQSTLTILATAFALSLSFLIPSLNTRVRGEIILGGAAFAVWRGIRIWWPVFRLRDRDRRHLFVQSFWLLVLPFIVYFYLLTGAIGLLRGDTLSVYDVSGALLSMFVLALRNTWRLVVNVEEDEPSARSKVSPNPKPQDGTVRPDNRGET
Ga0207684_10000003768	F012763	AGG	MVDLSSHNTNPPGVFDGEAVPISDVAEARIDLAVAALRKFLADRGQAPTADSWTAAGMRPSDKTIRRRFGSFKTAVAAVWSGLDNK
Ga0207684_10000003804	F001373	GGAGG	MSAEDAATKEELLLELRGKNTTRTIKEFSPAGIRLENNLEGEVKGIYNATYYATIDALVKPDGTIDYETRQIHTTDDGDTVLVDYKGKSIRESPTHNKFVGENTFQTSSKKLAWLNGTKSRHEGEYNPVTGEQNFRVYAKR
Ga0207684_1000000383	F007397	GGA	VSGQEAGGIGLGLFAVLIGAGGIAAAIRTRRRREHIAATYGATGGIVYTVVQAGCSAVLMLGGLGLIVLALVLRR