NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F096956

Metagenome / Metatranscriptome Family F096956

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096956
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 56 residues
Representative Sequence MGVRVPRLGSDVSAAPVVKPLVVLAARFLGPGPLRLKMVKLAHELDDRQARRIAA
Number of Associated Samples 66
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 50.49 %
% of genes near scaffold ends (potentially truncated) 18.27 %
% of genes from short scaffolds (< 2000 bps) 57.69 %
Associated GOLD sequencing projects 49
AlphaFold2 3D model prediction Yes
3D model pTM-score0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (79.808 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(38.462 % of family members)
Environment Ontology (ENVO) Unclassified
(35.577 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(53.846 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 42.17%    β-sheet: 0.00%    Coil/Unstructured: 57.83%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF01741MscL 25.96
PF01063Aminotran_4 16.35
PF13185GAF_2 11.54
PF08281Sigma70_r4_2 2.88
PF08241Methyltransf_11 1.92
PF14759Reductase_C 1.92
PF00082Peptidase_S8 1.92
PF02325YGGT 0.96
PF00912Transgly 0.96
PF13641Glyco_tranf_2_3 0.96
PF00990GGDEF 0.96
PF13492GAF_3 0.96
PF08352oligo_HPY 0.96
PF07681DoxX 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG0115Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyaseAmino acid transport and metabolism [E] 32.69
COG1970Large-conductance mechanosensitive channelCell wall/membrane/envelope biogenesis [M] 25.96
COG0744Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidaseCell wall/membrane/envelope biogenesis [M] 0.96
COG0762Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT familyPosttranslational modification, protein turnover, chaperones [O] 0.96
COG2259Uncharacterized membrane protein YphA, DoxX/SURF4 familyFunction unknown [S] 0.96
COG4270Uncharacterized membrane proteinFunction unknown [S] 0.96
COG4953Membrane carboxypeptidase/penicillin-binding protein PbpCCell wall/membrane/envelope biogenesis [M] 0.96
COG5009Membrane carboxypeptidase/penicillin-binding proteinCell wall/membrane/envelope biogenesis [M] 0.96

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms79.81 %
UnclassifiedrootN/A20.19 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001086|JGI12709J13192_1000327All Organisms → cellular organisms → Bacteria8804Open in IMG/M
3300001661|JGI12053J15887_10547654Not Available551Open in IMG/M
3300002558|JGI25385J37094_10001443All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces7549Open in IMG/M
3300002558|JGI25385J37094_10005764All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia4362Open in IMG/M
3300005174|Ga0066680_10000606All Organisms → cellular organisms → Bacteria12698Open in IMG/M
3300005174|Ga0066680_10095597All Organisms → cellular organisms → Bacteria → Terrabacteria group1811Open in IMG/M
3300005176|Ga0066679_10889652All Organisms → cellular organisms → Bacteria → Terrabacteria group562Open in IMG/M
3300005445|Ga0070708_100398477All Organisms → cellular organisms → Bacteria1298Open in IMG/M
3300005445|Ga0070708_101118840All Organisms → cellular organisms → Bacteria → Terrabacteria group737Open in IMG/M
3300005467|Ga0070706_100001559All Organisms → cellular organisms → Bacteria23925Open in IMG/M
3300005468|Ga0070707_100528672Not Available1141Open in IMG/M
3300005468|Ga0070707_100551851All Organisms → cellular organisms → Bacteria1114Open in IMG/M
3300005468|Ga0070707_100980414All Organisms → cellular organisms → Bacteria810Open in IMG/M
3300005471|Ga0070698_100018794All Organisms → cellular organisms → Bacteria7273Open in IMG/M
3300005471|Ga0070698_100180232All Organisms → cellular organisms → Bacteria2051Open in IMG/M
3300005471|Ga0070698_100970734All Organisms → cellular organisms → Bacteria → Terrabacteria group796Open in IMG/M
3300005518|Ga0070699_100000491All Organisms → cellular organisms → Bacteria37623Open in IMG/M
3300005536|Ga0070697_100097503All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2439Open in IMG/M
3300005552|Ga0066701_10464078Not Available786Open in IMG/M
3300005554|Ga0066661_10287352All Organisms → cellular organisms → Bacteria → Terrabacteria group1014Open in IMG/M
3300005555|Ga0066692_10010526All Organisms → cellular organisms → Bacteria4354Open in IMG/M
3300005555|Ga0066692_10515297All Organisms → cellular organisms → Bacteria → Terrabacteria group760Open in IMG/M
3300005557|Ga0066704_10010309All Organisms → cellular organisms → Bacteria5133Open in IMG/M
3300005559|Ga0066700_10422409All Organisms → cellular organisms → Bacteria → Terrabacteria group938Open in IMG/M
3300005568|Ga0066703_10004978All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia5877Open in IMG/M
3300005586|Ga0066691_10139791All Organisms → cellular organisms → Bacteria → Terrabacteria group1387Open in IMG/M
3300005586|Ga0066691_10156589All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces1313Open in IMG/M
3300006047|Ga0075024_100308192Not Available778Open in IMG/M
3300006797|Ga0066659_11138597All Organisms → cellular organisms → Bacteria → Terrabacteria group652Open in IMG/M
3300007255|Ga0099791_10003240All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia6605Open in IMG/M
3300007258|Ga0099793_10097296All Organisms → cellular organisms → Bacteria → Terrabacteria group1358Open in IMG/M
3300009038|Ga0099829_10702715All Organisms → cellular organisms → Bacteria840Open in IMG/M
3300009088|Ga0099830_10028861All Organisms → cellular organisms → Bacteria3722Open in IMG/M
3300009088|Ga0099830_10612251All Organisms → cellular organisms → Bacteria894Open in IMG/M
3300009088|Ga0099830_10931203Not Available719Open in IMG/M
3300009089|Ga0099828_10544126Not Available1046Open in IMG/M
3300009089|Ga0099828_10690282All Organisms → cellular organisms → Bacteria917Open in IMG/M
3300009090|Ga0099827_10104112All Organisms → cellular organisms → Bacteria2261Open in IMG/M
3300009090|Ga0099827_10870886All Organisms → cellular organisms → Bacteria780Open in IMG/M
3300009090|Ga0099827_11762387Not Available540Open in IMG/M
3300010860|Ga0126351_1209923All Organisms → cellular organisms → Bacteria598Open in IMG/M
3300011269|Ga0137392_10143841All Organisms → cellular organisms → Bacteria1920Open in IMG/M
3300011269|Ga0137392_10388648Not Available1158Open in IMG/M
3300011269|Ga0137392_11517054Not Available529Open in IMG/M
3300011270|Ga0137391_10205914All Organisms → cellular organisms → Bacteria → Terrabacteria group1710Open in IMG/M
3300011271|Ga0137393_10508097All Organisms → cellular organisms → Bacteria1034Open in IMG/M
3300012096|Ga0137389_10227994Not Available1559Open in IMG/M
3300012096|Ga0137389_10709555All Organisms → cellular organisms → Bacteria → Terrabacteria group864Open in IMG/M
3300012189|Ga0137388_10096616All Organisms → cellular organisms → Bacteria2528Open in IMG/M
3300012189|Ga0137388_10542594Not Available1081Open in IMG/M
3300012189|Ga0137388_10953169All Organisms → cellular organisms → Bacteria → Terrabacteria group793Open in IMG/M
3300012189|Ga0137388_11123294All Organisms → cellular organisms → Bacteria723Open in IMG/M
3300012199|Ga0137383_10000814All Organisms → cellular organisms → Bacteria17328Open in IMG/M
3300012199|Ga0137383_10106779All Organisms → cellular organisms → Bacteria → Terrabacteria group2036Open in IMG/M
3300012203|Ga0137399_10001348All Organisms → cellular organisms → Bacteria11117Open in IMG/M
3300012203|Ga0137399_10047566All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3093Open in IMG/M
3300012205|Ga0137362_10105484All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2378Open in IMG/M
3300012210|Ga0137378_10000753All Organisms → cellular organisms → Bacteria25981Open in IMG/M
3300012211|Ga0137377_10004214All Organisms → cellular organisms → Bacteria11295Open in IMG/M
3300012363|Ga0137390_11729137Not Available559Open in IMG/M
3300012918|Ga0137396_10049759All Organisms → cellular organisms → Bacteria2869Open in IMG/M
3300018468|Ga0066662_10013718All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4316Open in IMG/M
3300018468|Ga0066662_10114730All Organisms → cellular organisms → Bacteria → Terrabacteria group1949Open in IMG/M
3300018468|Ga0066662_10170327Not Available1677Open in IMG/M
3300018468|Ga0066662_11743939All Organisms → cellular organisms → Bacteria652Open in IMG/M
3300021559|Ga0210409_11188461Not Available638Open in IMG/M
3300025910|Ga0207684_10000003All Organisms → cellular organisms → Bacteria766933Open in IMG/M
3300025922|Ga0207646_10002293All Organisms → cellular organisms → Bacteria22727Open in IMG/M
3300025922|Ga0207646_10239449All Organisms → cellular organisms → Bacteria1639Open in IMG/M
3300025922|Ga0207646_10598383All Organisms → cellular organisms → Bacteria990Open in IMG/M
3300025922|Ga0207646_11623868All Organisms → cellular organisms → Bacteria → Terrabacteria group557Open in IMG/M
3300026298|Ga0209236_1000562All Organisms → cellular organisms → Bacteria21766Open in IMG/M
3300026309|Ga0209055_1029227All Organisms → cellular organisms → Bacteria → Terrabacteria group2541Open in IMG/M
3300026318|Ga0209471_1015309All Organisms → cellular organisms → Bacteria3934Open in IMG/M
3300026328|Ga0209802_1076422Not Available1567Open in IMG/M
3300026328|Ga0209802_1287527Not Available547Open in IMG/M
3300026333|Ga0209158_1008059All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces5387Open in IMG/M
3300026333|Ga0209158_1088663All Organisms → cellular organisms → Bacteria1195Open in IMG/M
3300026499|Ga0257181_1052413All Organisms → cellular organisms → Bacteria680Open in IMG/M
3300026532|Ga0209160_1063930All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2035Open in IMG/M
3300026532|Ga0209160_1253986All Organisms → cellular organisms → Bacteria → Terrabacteria group598Open in IMG/M
3300026551|Ga0209648_10063865All Organisms → cellular organisms → Bacteria3116Open in IMG/M
3300026551|Ga0209648_10683831All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300027587|Ga0209220_1000193All Organisms → cellular organisms → Bacteria25836Open in IMG/M
3300027603|Ga0209331_1130011Not Available605Open in IMG/M
3300027655|Ga0209388_1001418All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces5640Open in IMG/M
3300027681|Ga0208991_1017216All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2178Open in IMG/M
3300027727|Ga0209328_10001818All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces5985Open in IMG/M
3300027727|Ga0209328_10044248All Organisms → cellular organisms → Bacteria1367Open in IMG/M
3300027748|Ga0209689_1015932All Organisms → cellular organisms → Bacteria4785Open in IMG/M
3300027846|Ga0209180_10004851All Organisms → cellular organisms → Bacteria6782Open in IMG/M
3300027862|Ga0209701_10089579All Organisms → cellular organisms → Bacteria1931Open in IMG/M
3300027875|Ga0209283_10664073All Organisms → cellular organisms → Bacteria655Open in IMG/M
3300027875|Ga0209283_10898244Not Available536Open in IMG/M
3300027882|Ga0209590_10000793All Organisms → cellular organisms → Bacteria11077Open in IMG/M
3300027882|Ga0209590_10090550All Organisms → cellular organisms → Bacteria1808Open in IMG/M
3300027915|Ga0209069_10360440Not Available787Open in IMG/M
3300028047|Ga0209526_10301591All Organisms → cellular organisms → Bacteria → Terrabacteria group1084Open in IMG/M
3300028536|Ga0137415_10096936All Organisms → cellular organisms → Bacteria2802Open in IMG/M
3300028536|Ga0137415_10107145All Organisms → cellular organisms → Bacteria → Terrabacteria group2644Open in IMG/M
3300032180|Ga0307471_100129752All Organisms → cellular organisms → Bacteria2373Open in IMG/M
3300032180|Ga0307471_101396992Not Available860Open in IMG/M
3300032180|Ga0307471_102796147All Organisms → cellular organisms → Bacteria → Terrabacteria group619Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil38.46%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil22.12%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere15.38%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil8.65%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil7.69%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.88%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.92%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil0.96%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001086Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3EnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300002558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cmEnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300006047Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300010860Boreal forest soil eukaryotic communities from Alaska, USA - C5-2 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026298Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026309Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)EnvironmentalOpen in IMG/M
3300026318Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)EnvironmentalOpen in IMG/M
3300026328Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)EnvironmentalOpen in IMG/M
3300026333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)EnvironmentalOpen in IMG/M
3300026499Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-BEnvironmentalOpen in IMG/M
3300026524Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)EnvironmentalOpen in IMG/M
3300026532Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)EnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300027587Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027603Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027655Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027681Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027727Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027915Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12709J13192_100032753300001086Forest SoilVGASVVRLTRVVNARPVVVKPYVLLAARLVGPGPLRLKMVKLAHELDDRHVSRIAT*
JGI12053J15887_1054765423300001661Forest SoilMQCQYSRSRARSLFEMGARVEKFANDVINANPVVARPLVVLVARFLGPGPLRLRMVKLAHELDDRQVLREAA*
JGI25385J37094_1000144373300002558Grasslands SoilVLKLTSEIVNARPVVKPLVVLAARFLGPGPLRLKMVKLAHELDDPQERREAA*
JGI25385J37094_1000576413300002558Grasslands SoilMGARIPRLANDVVNARPVVRPIVVLAARFLGPGPLRLKLVKLAHELDDRETPSAAA*
Ga0066680_1000060633300005174SoilVERFTIEVVNANPVVARPLVVLVARFLGPGPLRLKMVKLAHELDDRQVRREAA*
Ga0066680_1009559713300005174SoilMGARFLIGMGVRVPRLGSDVSAAPVVKPLVVLAARFLGPGPLRLKMVKLAHELDDRQARRIAA*
Ga0066679_1088965223300005176SoilMGVRVPRLGSDVIAAPVVKPFVVLAARFLGPGPLRLKMVKLAHELDDRQARRIAA*
Ga0070708_10039847733300005445Corn, Switchgrass And Miscanthus RhizosphereMGEMGARVLRLTSEARPVVVKPFVVLAARFLGPGPLRLKMVKLAHELDTNRRDRPAAA*
Ga0070708_10111884023300005445Corn, Switchgrass And Miscanthus RhizosphereLREAASQQILAADRAFSNRMGVRVPRLGGDVSAAPVVKPFVVLAARFLGPGPLRLKMVKLAHELDDRQARRIAA*
Ga0070706_100001559103300005467Corn, Switchgrass And Miscanthus RhizosphereMGGTSEVAKPVNARPVVIKSLALLAARAMGPGPLRLKMVKLAHDLDDAHVRRVAV*
Ga0070707_10052867223300005468Corn, Switchgrass And Miscanthus RhizosphereVLRLTSEVASVVNARPVVIKSLVLLAARAMGPGPLRLKMVKLAHDLDDGHVSRVAA*
Ga0070707_10055185133300005468Corn, Switchgrass And Miscanthus RhizosphereVRFLHKMGGTSEVAKPVNARPVVIKSLVLLAARAMGPGPLRLKMVKLAHDLD
Ga0070707_10098041423300005468Corn, Switchgrass And Miscanthus RhizosphereMLGQYSGGRARSTGEMGARVLRLTSEAKPVVVKPFVVLAARFLGPGPLRLKMVKLAHELDSDRRDRPAAA*
Ga0070698_10001879493300005471Corn, Switchgrass And Miscanthus RhizosphereMLKLNGEVGLAGPVVKPFVVLAARFLGPGPLRLKMVKLAHELDERSARKAA*
Ga0070698_10018023243300005471Corn, Switchgrass And Miscanthus RhizosphereVLRLTREVASVVNPRPVVIKSLVLLAARAMGPGPLRLKMVKLAHDLDDGHVSRVAA*
Ga0070698_10097073433300005471Corn, Switchgrass And Miscanthus RhizosphereMGEMGARVLRLTSEARPVVVKPFVVLAARFLGPGPLRLKMVKLAHELESDRRDRPAAA*
Ga0070699_100000491353300005518Corn, Switchgrass And Miscanthus RhizosphereMGEMGARVLRLTSEAKPVVVKPFVVLAARFLGPGPLRLKMVKLAHELDSDRRDRPAAA*
Ga0070697_10009750333300005536Corn, Switchgrass And Miscanthus RhizosphereMGGTSEVAKPVNARPVVIKSLVLLAARAMGPGPLRLKMVKLAHDLDAGHVRRVAV*
Ga0066701_1046407823300005552SoilVARVLKLTSEIVNARPVVKPLVVLAARFLGPGPLRLKMVKLAHELDDPQERREAA*
Ga0066661_1028735223300005554SoilMGVRVPRLGSDVSAAPVVKPFVVLAARFLGPGPLRLKMVKLAHELDDRQSRRAAA*
Ga0066692_1001052623300005555SoilVPRLGSDVSAAPVVKPLVVLAARFLGPGPLRLKMVKLAHELDDRQARRIAA*
Ga0066692_1051529723300005555SoilVIHDPQRQYSRSRARSLFEMGARVERFTIEVVNANPVVARPLVVLVARFLGPGPLRLKMVKLAHELDDRQVRREAA*
Ga0066704_1001030923300005557SoilVEKFATDVINANPVVARPLVVLVARFLGPGPLRLRMVKLAHELDDRQVLREAA*
Ga0066700_1042240923300005559SoilMGARVERFTIEVVNANPVVARPLVVLVARFLGPGPLRLKMVKLAHELDDRQVRREAA*
Ga0066703_1000497853300005568SoilVEKFATDVINANPVVARPLVVLVARFLGPGPLRLRMVKLVHELDDRQVLREAA*
Ga0066691_1013979123300005586SoilVPRLGSDVIAAPVVKPFVVLAARFLGPGPLRLKMVKLAHELDDRQARRIAA*
Ga0066691_1015658913300005586SoilNGMGVRVPRLGSDVSAAPVVKPFVVLAARFLGPGPLRLKMVKLAHELDDRQSRRAAA*
Ga0075024_10030819223300006047WatershedsMGARVLRLTSGVVNARPVVFKPFVLLAARVIGPGPLRLKMVKLAHQLDDRQVSRLAA*
Ga0066659_1113859723300006797SoilMGARFLIGMGVRVPRLGSDVSAAPVVKPLVVLAARFLGPGPLRLKMVKLAHELD
Ga0099791_1000324073300007255Vadose Zone SoilMGGRVLRLTSAVVSGRPVVVKPLVLLAAKVMGPGPLRLKMVKLAHELDDGELSRVAG*
Ga0099793_1009729623300007258Vadose Zone SoilMGARVEKFASDVINANPVVARPLVVMVARFLGPGPLRLRMVKLAHELDDRQVLREAA*
Ga0099829_1070271523300009038Vadose Zone SoilMGGRVLRLTSEVVSARLVVVKPLVLLAAKVMAPGPLRLKMVKLAHELDDGEVSRVAG*
Ga0099830_1002886143300009088Vadose Zone SoilVLRLPSDLVNAVSARSAVVKPLVLLAARVVGPGALRLKMVKLAHELDDRQGCRVAA*
Ga0099830_1061225133300009088Vadose Zone SoilVLKLTTDVVKARPVVKPLVVLAARFLGPGPLRLKMVKLAHGLEDAEDRREAA*
Ga0099830_1093120323300009088Vadose Zone SoilVLRVTNDVVMARPLVVKRLVLLAAKVMGPGPLRLKMVKLAHELDHREARRLAA*
Ga0099828_1054412613300009089Vadose Zone SoilVGAKVLRLTSEVVNARPVVVRPFVLLAARVMGPGPLRLRMVKLAHELDDRKARRLAA*
Ga0099828_1069028213300009089Vadose Zone SoilVLRLTSDLVNAVSARSAVVKPLVLLAARVVGPGALRLKMVKLAHELDDRQGCRVAA*
Ga0099827_1010411213300009090Vadose Zone SoilMGGGVLRLISEVVSARPVVVKPLVLLAAKVMGPGPLRLKMVKLAHELDDREVSRLV
Ga0099827_1087088633300009090Vadose Zone SoilMGGRVLRLTSEVVSARPVVVKPLVLLAAKVMGPRPLRLKMVKLAHELDDGELSRVAR*
Ga0099827_1176238723300009090Vadose Zone SoilVLRLTSDLVNAVTAKPVVKPLVLLAARVMGPGALRLKMVKLAHELDDRQASRVAA*
Ga0126351_120992313300010860Boreal Forest SoilVGARVLRLTSEVVNARPVVVRPLVLLVARVVGPGPLRLKMVKLAHELDD
Ga0137392_1014384123300011269Vadose Zone SoilVGAKVLRLTSEVVNARPVVVRPFVLLAARVMGPGPLRLRMVKLAHELDDRKVRRLAA*
Ga0137392_1038864813300011269Vadose Zone SoilARSLFEMGARVEKFASDVVNANPVVARPLVVLVARFLGPGPLRLRMVKLAHELDDRQVLREAA*
Ga0137392_1151705413300011269Vadose Zone SoilRRTRFLTEMGGRVLRLTSEVANAVDPRRVIVKPLVLLAARVMGPGPLRLKMVKLAHDLDDRHAGQVAA*
Ga0137391_1020591423300011270Vadose Zone SoilMLKLNGDVGFAGPVVKPFVVLAARFLGPGPLRLKMVKLAHELDERSARRAA*
Ga0137393_1050809723300011271Vadose Zone SoilMGGRVLRLTSEVVSARSVVVKPLVLLAAKVMGPGPLRLKMVKLAHELDDGEVSRVAG*
Ga0137389_1022799423300012096Vadose Zone SoilMGVRVPRFGSNVSAAPVVKPFVVLAARFLGPGPMRLKMVKLAHELDDRQARRMAA*
Ga0137389_1070955533300012096Vadose Zone SoilMGARVEKFASDVVNANPVVARPLVVLVARFLGPGPLRLRMVKLAHELDDRQVLR
Ga0137388_1009661613300012189Vadose Zone SoilVLKLRGDVVNARPVVKPLVVLAAKFLGPGPLRLKMVKLAHELD
Ga0137388_1054259433300012189Vadose Zone SoilVTSDVVNAWPVVKPLLAVAARFLGPGPLRLKMVRLAHGLEGPRDRRRAA*
Ga0137388_1095316933300012189Vadose Zone SoilMGVRVPRFGSNVSAAPVVKPFVVLAARFLGPGPMRLKMVKLAH
Ga0137388_1112329413300012189Vadose Zone SoilMGGTVLRLTSEVVSARLVVVKPLVLLAAKVMAPGPLRLKMVKLAHELDDGEVSRVAG*
Ga0137383_1000081453300012199Vadose Zone SoilMGVRVPKLGSDVSAAPVVKPLVVLAARFLGPGPLRLKMVKLAHELDDRQARRIAA*
Ga0137383_1010677913300012199Vadose Zone SoilMGVRVPRLGSDVSAAPVVKPLVVLAARFLGPGPLRLKMVKLAHELDDRQ
Ga0137399_1000134873300012203Vadose Zone SoilMGARVEKFASDVINANPVVARPLVVLVARFLGPGPLRLRMVKLAHELDDRQVLREAA*
Ga0137399_1004756653300012203Vadose Zone SoilMMGARVLKLTGDIVNARPVVKPLVILAARFMGPGPLRLRMVKLAHELDDPQERREAA*
Ga0137362_1010548433300012205Vadose Zone SoilMGGRVLRLTSAVVSARPVVVRPLVLLAAKVMGPGPLRLKMVKLAHELDDGELSRVAG*
Ga0137378_10000753193300012210Vadose Zone SoilMGEMGARVVKLTGDAGPVVIKPFVVLAARFLGPGPLRLKMVKLAHELDADRRERPTAA*
Ga0137377_1000421493300012211Vadose Zone SoilMGVRVPRLGSDVSAAPVVKPLVVLAARFLGPGPLRLKMVKLAHELDDRQARRIAA*
Ga0137390_1172913723300012363Vadose Zone SoilMGGWVLRLISEVVSATPVVVKPLVLLAAKVMGPGPLRLKMVKLAHELDDREVSRLVG*
Ga0137396_1004975933300012918Vadose Zone SoilMMGARVLKLTGDIVNARPVVKPLVILAAKFMGPGPLRLRMVKLAHELDDPQERREAA*
Ga0066662_1001371863300018468Grasslands SoilMGARIPRLANDVVNARPVVRPIVVLAARFLGPGPLRLKLVKLAHELDDRETPSAAA
Ga0066662_1011473033300018468Grasslands SoilMGARFLIGMGVRVPRLGSDVSAAPVVKPLVVLAARFLGPGPLRLKMVKLAHELDDRQARRIAA
Ga0066662_1017032733300018468Grasslands SoilVIHDPQRQYSRSRARSLFEMGARVERFTIEVVNANPVVARPLVVLVARFLGPGPLRLKMVKLAHELDDRQVRREAA
Ga0066662_1174393913300018468Grasslands SoilVARVLKLTSEIVNARPVVKPLVVLAARFLGPGPLRLKMVKLAHELDDPQERREAA
Ga0210409_1118846113300021559SoilVARLAGVVNARPVVVKPFILLAARVMGPGPLRLKMVKLAHELDDRQVDRLAA
Ga0207684_100000033273300025910Corn, Switchgrass And Miscanthus RhizosphereVRFLHKMGGTSEVAKPVNARPVVIKSLALLAARAMGPGPLRLKMVKLAHDLDDAHVRRVA
Ga0207646_10002293183300025922Corn, Switchgrass And Miscanthus RhizosphereVRFLHKMGETSEVAKPVNARPVVIKSLVLLAARAMGPGPLRLKMVKLAHDLDAGHVRRVA
Ga0207646_1023944933300025922Corn, Switchgrass And Miscanthus RhizosphereMGEMGARVLRLTSEARPVVVKPFVVLAARFLGPGPLRLRMVKLAHELDADRRDRPAAA
Ga0207646_1059838333300025922Corn, Switchgrass And Miscanthus RhizosphereMGGRVLRLTSEVASVVNARPVVIKSLVLLAARAMGPGPLRLKMVKLAHDLDDGHVSRVAA
Ga0207646_1162386823300025922Corn, Switchgrass And Miscanthus RhizosphereMGEMGARVLRLTSEAKPVVVKPFVVLAARFLGPGPLRLKMVKLAHELDSDRRDRPAAA
Ga0209236_100056243300026298Grasslands SoilVLKLTSEIVNARPVVKPLVVLAARFLGPGPLRLKMVKLAHELDDPQERREAA
Ga0209055_102922723300026309SoilMGVRVPRLGSDVSAAPVVKPFVVLAARFLGPGPLRLKMVKLAHELDDRQSRRAAA
Ga0209471_101530953300026318SoilVEKFATDVINANPVVARPLVVLVARFLGPGPLRLRMVKLAHELDDRQVLREAA
Ga0209802_107642213300026328SoilVERFTSEVVNANPVVVRPLVVLVARFLGPGPLRLKMVKLAHELDDRQVRREAA
Ga0209802_128752723300026328SoilMGARVERFTIEVVNANPVVARPLVVLVARFLGPGPLRLKMVKLAHELDDRQVRREAA
Ga0209158_100805943300026333SoilVPRLGSDVSAAPVVKPLVVLAARFLGPGPLRLKMVKLAHELDDRQARRIAA
Ga0209158_108866313300026333SoilVPRLGSDVIAAPVVKPFVVLAARFLGPGPLRLKMVKLAHELDDRQARRIAA
Ga0257181_105241323300026499SoilMAGAFSRRDGARVLKLTGDIVNARPVVKPLVILAAKFMGPGPLRLRMVKLAHELDDPQERREAA
Ga0209690_117800913300026524SoilMGARFLIGMGVRVPRLGSDVSAAPVVKPLVVLAARFLGPGPLRLKMVK
Ga0209160_106393013300026532SoilIHDVQCQYSRSRARSLFEMGARVEKFATDVINANPVVARPLVVLVARFLGPGPLRLRMVKLAHELDDRQVLREAA
Ga0209160_125398623300026532SoilMGVRVPRLGSDVSAAPVVKPLVVLAARFLGPGPLRLKMVKLAHELDDRQARRIAA
Ga0209648_1006386533300026551Grasslands SoilMRGRVLRLIGEVVSVRPVVVKPLVLLAAKVIGPGPLRLKMVRLAHELDDREVSRVAG
Ga0209648_1068383123300026551Grasslands SoilMLKLNGDVGFAGPVVKPFVVLAARFLGPGPLRLKMVKLAHELDERSARRA
Ga0209220_100019383300027587Forest SoilVGASVVRLTRVVNARPVVVKPYVLLAARLVGPGPLRLKMVKLAHELDDRHVSRIAT
Ga0209331_113001113300027603Forest SoilLSNDAVDARPSIVKPFVLLAARLLGPGPRRLSLVKLAHELDDRQDRRAAA
Ga0209388_100141823300027655Vadose Zone SoilVLRLTSAVVSGRPVVVKPLVLLAAKVMGPGPLRLKMVKLAHELDDGELSRVAG
Ga0208991_101721633300027681Forest SoilVEKFASDVVNANPVVARPLVVLVARFLGPGPLRLRMVKLAHELDDRQVLREAA
Ga0209328_1000181853300027727Forest SoilVERFASEVVNANPVVARPLIVLVARFLGPGPLRLRMVKLAHELDDRQVLREAA
Ga0209328_1004424823300027727Forest SoilMGARVLKLTNDMVNARPVAAKPFVVFAARFLGPGPLRLKMVKLAHELDDPQRRRFAA
Ga0209689_101593253300027748SoilVERFTIEVVNANPVVARPLVVLVARFLGPGPLRLKMVKLAHELDDRQVRREAA
Ga0209180_1000485193300027846Vadose Zone SoilVLRLTSEVVSARLVVVKPLVLLAAKVMAPGPLRLKMVKLAHELDDGEVSRVAG
Ga0209701_1008957943300027862Vadose Zone SoilVRREGGVLRLTSDLVNAVSARSAVVKPLVLLAARVVGPGALRLKMVKLAHELDDRQGCRVAA
Ga0209283_1066407313300027875Vadose Zone SoilMGGRVRRLISEVVSARPVVVKPLVLLAAKAIGPGPLRLKMVKLAHELGD
Ga0209283_1089824413300027875Vadose Zone SoilRREGGVRRLTSDLVNAVSARSAVVKPLVLLAARVVGPGALRLKMVKLAHELDDRQGCRVA
Ga0209590_1000079383300027882Vadose Zone SoilMGGWVLRLISEVVSATPVVVKPLVLLAAKVMGPGPLRLKMVKLAHELDDREVSRLVG
Ga0209590_1009055043300027882Vadose Zone SoilMGGRVLRLTSEVANAVDPRPVIVKPLVLLAARVMGPGPLRLKMVKLAHGLDDRHVGRVTA
Ga0209069_1036044023300027915WatershedsMGARVLRLTSGVVNARPVVFKPFVLLAARVIGPGPLRLKMVKLAHQLDDRQVSRLAA
Ga0209526_1030159123300028047Forest SoilLKLTNDMVKARPVAAKPFVVFAARFLGPGPLRLKMVKLAHELDDPQRRRFAA
Ga0137415_1009693643300028536Vadose Zone SoilMMGARVLKLTGDIVNARPVVKPLVILAAKFMGPGPLRLRMVKLAHELDDPQERREAA
Ga0137415_1010714533300028536Vadose Zone SoilVEKFASDVINANPVVARPLVVLVARFLGPGPLRLRMVKLAHELDDRQVLREAA
Ga0307471_10012975233300032180Hardwood Forest SoilVLKLTSEMVNARPVVKPLVVLAARLMGPGPLRLRMVKLAHELDDPQERREAA
Ga0307471_10139699223300032180Hardwood Forest SoilVAAAVVRLSRVVKARPVVVKPLVLLAARVVGPGPLRLKMVKLAHELDDRQISRAAA
Ga0307471_10279614723300032180Hardwood Forest SoilMGVRVPRLGGDVSAAPVVKPFVVLAARFLGPGPLRLKMVKLAHELDDRQARR

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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