Scaffold Ga0207647_10006262

Overview

Basic Information

• Taxon OID: 3300025904
• Scaffold ID: Ga0207647_10006262
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8668
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012059	Metagenome / Metatranscriptome	284	Y
F079157	Metagenome / Metatranscriptome	116	Y
F090738	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207647_100062623	F012059	GGAG	MKKQYLHLSAYGCNECKGPVVSGWLAVRESEISKETDIRQVGAVCLSCGHRQSKMTELGITRQFPPVEWESAPLIDGSHLDNAFSEMLDLAR
Ga0207647_100062625	F090738	GGAG	MTNCLKCENLNRVYESRLTRYLAARSAALYRISTEFAAKQQVEMERAKNDMEEHRLICPFVAKVRCLALVPLQEAFNLWRFQ
Ga0207647_100062626	F079157	AGGAG	MHRADLLKPDLLSEIVLLGAGALIFAALLFVTVTALARS