Scaffold Ga0209533_1139891

Overview

Basic Information

• Taxon OID: 3300025874
• Scaffold ID: Ga0209533_1139891
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1106
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004166	Metagenome / Metatranscriptome	450	N
F093220	Metagenome / Metatranscriptome	106	N
F098743	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209533_11398911	F093220	N/A	NLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN
Ga0209533_11398912	F004166	N/A	MKKLILLFLLVPLISCSDHQTNDSWGSYATNKETQKQEFWFTSYKTREECIADMSWQLEGEDDPNKKRISNLHTKPYGCHFMSNNKWLSMYYYLVYKDEGLGCLWESSNPNVRIKYTVTLKTFVIAPEQGRCILGD
Ga0209533_11398914	F098743	N/A	MKYLILICFISAITTCAMAQDTSSEFYIPSESNAYQGRLIYDASKEDYPIDKMIKL