NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F098743

Metagenome / Metatranscriptome Family F098743

Go to section:
Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F098743
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 54 residues
Representative Sequence MKYLILLCFIIAITTCAMAHDKSSEFYIPSESNAYQGRLIYDSSKEDYPIDKMIK
Number of Associated Samples 93
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 29.33 %
% of genes near scaffold ends (potentially truncated) 72.82 %
% of genes from short scaffolds (< 2000 bps) 70.87 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (72.816 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine
(18.447 % of family members)
Environment Ontology (ENVO) Unclassified
(69.903 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(95.146 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 32.73%    β-sheet: 3.64%    Coil/Unstructured: 63.64%
Feature Viewer
Powered by Feature Viewer


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms72.82 %
UnclassifiedrootN/A27.18 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000153|SI39nov09_135mDRAFT_c1009477All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5802391Open in IMG/M
3300000930|BpDRAFT_10263454All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580516Open in IMG/M
3300001346|JGI20151J14362_10118835All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580859Open in IMG/M
3300001346|JGI20151J14362_10190436All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580570Open in IMG/M
3300001349|JGI20160J14292_10234975All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580513Open in IMG/M
3300001353|JGI20159J14440_10038715All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801942Open in IMG/M
3300001355|JGI20158J14315_10141869All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580748Open in IMG/M
3300003498|JGI26239J51126_1085355All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580553Open in IMG/M
3300004278|Ga0066609_10119124All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580862Open in IMG/M
3300004279|Ga0066605_10148755All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580931Open in IMG/M
3300007229|Ga0075468_10131868All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580768Open in IMG/M
3300007627|Ga0102869_1208424All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580522Open in IMG/M
3300007863|Ga0105744_1184297All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580524Open in IMG/M
3300009050|Ga0102909_1164299All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580533Open in IMG/M
3300009071|Ga0115566_10800963All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580518Open in IMG/M
3300009077|Ga0115552_1158363All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580947Open in IMG/M
3300009080|Ga0102815_10403963All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580760Open in IMG/M
3300009080|Ga0102815_10849120All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580521Open in IMG/M
3300009172|Ga0114995_10133317All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801389Open in IMG/M
3300009193|Ga0115551_1171292All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580987Open in IMG/M
3300009420|Ga0114994_10688685All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580667Open in IMG/M
3300009420|Ga0114994_11097726All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580513Open in IMG/M
3300009434|Ga0115562_1313646All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580535Open in IMG/M
3300009447|Ga0115560_1102577All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801175Open in IMG/M
3300009467|Ga0115565_10494321All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580549Open in IMG/M
3300009472|Ga0115554_1212673All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580781Open in IMG/M
3300009495|Ga0115571_1089740All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801346Open in IMG/M
3300009505|Ga0115564_10261657All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580877Open in IMG/M
3300012524|Ga0129331_1380244All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801689Open in IMG/M
3300012969|Ga0129332_1204399All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801361Open in IMG/M
3300012969|Ga0129332_1423146All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801852Open in IMG/M
3300016742|Ga0182052_1179865All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580774Open in IMG/M
3300017724|Ga0181388_1052871All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580980Open in IMG/M
3300017763|Ga0181410_1216506All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580521Open in IMG/M
3300020165|Ga0206125_10287343All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580618Open in IMG/M
3300020169|Ga0206127_1171199All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580817Open in IMG/M
3300020194|Ga0181597_10213120All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580925Open in IMG/M
3300020385|Ga0211677_10207211All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580811Open in IMG/M
3300021365|Ga0206123_10197797All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580895Open in IMG/M
3300021371|Ga0213863_10279491All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580705Open in IMG/M
3300021389|Ga0213868_10157736All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801397Open in IMG/M
3300021959|Ga0222716_10676007All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580552Open in IMG/M
(restricted) 3300022916|Ga0233431_1054900All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5802114Open in IMG/M
3300022922|Ga0255779_1347368All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580548Open in IMG/M
(restricted) 3300022931|Ga0233433_10152449All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801059Open in IMG/M
(restricted) 3300023109|Ga0233432_10202327All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580989Open in IMG/M
3300023698|Ga0228682_1055842All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580534Open in IMG/M
3300024228|Ga0228633_1128841All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580573Open in IMG/M
3300024242|Ga0228673_1097482All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580524Open in IMG/M
(restricted) 3300024259|Ga0233437_1127769All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801202Open in IMG/M
3300024293|Ga0228651_1124132All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580574Open in IMG/M
3300024415|Ga0228662_1052288All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801041Open in IMG/M
3300025138|Ga0209634_1257025All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580628Open in IMG/M
3300025620|Ga0209405_1185912All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580505Open in IMG/M
3300025622|Ga0209264_1139938All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580588Open in IMG/M
3300025623|Ga0209041_1049427All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801301Open in IMG/M
3300025626|Ga0209716_1083540All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580946Open in IMG/M
3300025640|Ga0209198_1188044All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580536Open in IMG/M
3300025668|Ga0209251_1076373All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801026Open in IMG/M
3300025688|Ga0209140_1114831All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580818Open in IMG/M
3300025699|Ga0209715_1097667All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801093Open in IMG/M
3300025809|Ga0209199_1102438All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801176Open in IMG/M
3300025874|Ga0209533_1139891All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801106Open in IMG/M
3300025874|Ga0209533_1259453All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580692Open in IMG/M
3300025881|Ga0209309_10225237All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580889Open in IMG/M
3300025890|Ga0209631_10427075All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580608Open in IMG/M
3300026479|Ga0228622_1119864All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580509Open in IMG/M
3300027253|Ga0208680_1076257All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580578Open in IMG/M
3300028008|Ga0228674_1182598All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580682Open in IMG/M
3300028128|Ga0228645_1143301All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580525Open in IMG/M
3300028131|Ga0228642_1068175All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580935Open in IMG/M
3300028131|Ga0228642_1167064All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580516Open in IMG/M
3300028136|Ga0228608_1203325All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580516Open in IMG/M
3300028397|Ga0228639_1139167All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580573Open in IMG/M
3300032011|Ga0315316_10718328All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580829Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine18.45%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater14.56%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine14.56%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine9.71%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine6.80%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine5.83%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater4.85%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine3.88%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater3.88%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous3.88%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh3.88%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater2.91%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater1.94%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water1.94%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine0.97%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.97%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine0.97%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000153Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 135mEnvironmentalOpen in IMG/M
3300000167Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 120mEnvironmentalOpen in IMG/M
3300000212Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 120mEnvironmentalOpen in IMG/M
3300000225Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 120mEnvironmentalOpen in IMG/M
3300000226Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 135mEnvironmentalOpen in IMG/M
3300000930Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16mEnvironmentalOpen in IMG/M
3300001346Pelagic Microbial community sample from North Sea - COGITO 998_met_01EnvironmentalOpen in IMG/M
3300001349Pelagic Microbial community sample from North Sea - COGITO 998_met_10EnvironmentalOpen in IMG/M
3300001353Pelagic Microbial community sample from North Sea - COGITO 998_met_09EnvironmentalOpen in IMG/M
3300001354Pelagic Microbial community sample from North Sea - COGITO 998_met_05EnvironmentalOpen in IMG/M
3300001355Pelagic Microbial community sample from North Sea - COGITO 998_met_08EnvironmentalOpen in IMG/M
3300003498Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_130m_DNAEnvironmentalOpen in IMG/M
3300004278Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_150mEnvironmentalOpen in IMG/M
3300004279Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10mEnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007627Estuarine microbial communities from the Columbia River estuary - metaG 1546A-02EnvironmentalOpen in IMG/M
3300007863Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459B_0.2umEnvironmentalOpen in IMG/M
3300009050Estuarine microbial communities from the Columbia River estuary - metaG 1557A-02EnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009076Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511EnvironmentalOpen in IMG/M
3300009077Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328EnvironmentalOpen in IMG/M
3300009080Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759EnvironmentalOpen in IMG/M
3300009172Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154EnvironmentalOpen in IMG/M
3300009193Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009434Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516EnvironmentalOpen in IMG/M
3300009447Pelagic marine microbial communities from North Sea - COGITO_mtgs_110509EnvironmentalOpen in IMG/M
3300009467Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530EnvironmentalOpen in IMG/M
3300009472Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404EnvironmentalOpen in IMG/M
3300009495Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531EnvironmentalOpen in IMG/M
3300009505Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523EnvironmentalOpen in IMG/M
3300009508Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412EnvironmentalOpen in IMG/M
3300012524Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012969Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016742Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011511BT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017724Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17EnvironmentalOpen in IMG/M
3300017763Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300018420Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020165Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1EnvironmentalOpen in IMG/M
3300020169Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1EnvironmentalOpen in IMG/M
3300020175Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2EnvironmentalOpen in IMG/M
3300020194Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041403US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020385Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300020595Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300021365Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1EnvironmentalOpen in IMG/M
3300021371Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497EnvironmentalOpen in IMG/M
3300021389Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127EnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300022916 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_200_MGEnvironmentalOpen in IMG/M
3300022922Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011508AT metaGEnvironmentalOpen in IMG/M
3300022931 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MGEnvironmentalOpen in IMG/M
3300023109 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MGEnvironmentalOpen in IMG/M
3300023698Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 27R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024228Seawater microbial communities from Monterey Bay, California, United States - 41DEnvironmentalOpen in IMG/M
3300024242Seawater microbial communities from Monterey Bay, California, United States - 91DEnvironmentalOpen in IMG/M
3300024259 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_200_MGEnvironmentalOpen in IMG/M
3300024293Seawater microbial communities from Monterey Bay, California, United States - 63DEnvironmentalOpen in IMG/M
3300024335Seawater microbial communities from Monterey Bay, California, United States - 90DEnvironmentalOpen in IMG/M
33000243480.2um to 3um size fraction coassemblyEnvironmentalOpen in IMG/M
3300024415Seawater microbial communities from Monterey Bay, California, United States - 76DEnvironmentalOpen in IMG/M
3300025138Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)EnvironmentalOpen in IMG/M
3300025620Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)EnvironmentalOpen in IMG/M
3300025622Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_150m (SPAdes)EnvironmentalOpen in IMG/M
3300025623Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025626Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)EnvironmentalOpen in IMG/M
3300025640Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519 (SPAdes)EnvironmentalOpen in IMG/M
3300025643Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_165m (SPAdes)EnvironmentalOpen in IMG/M
3300025668Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025688Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_120m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025699Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503 (SPAdes)EnvironmentalOpen in IMG/M
3300025705Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m (SPAdes)EnvironmentalOpen in IMG/M
3300025770Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_165m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025809Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523 (SPAdes)EnvironmentalOpen in IMG/M
3300025821Pelagic marine microbial communities from North Sea - COGITO_mtgs_110421 (SPAdes)EnvironmentalOpen in IMG/M
3300025860Pelagic Microbial community sample from North Sea - COGITO 998_met_03 (SPAdes)EnvironmentalOpen in IMG/M
3300025874Pelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes)EnvironmentalOpen in IMG/M
3300025881Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412 (SPAdes)EnvironmentalOpen in IMG/M
3300025890Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)EnvironmentalOpen in IMG/M
3300025892Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)EnvironmentalOpen in IMG/M
3300025894Pelagic Microbial community sample from North Sea - COGITO 998_met_09 (SPAdes)EnvironmentalOpen in IMG/M
3300026479Seawater microbial communities from Monterey Bay, California, United States - 26DEnvironmentalOpen in IMG/M
3300027253Estuarine microbial communities from the Columbia River estuary - metaG 1556A-02 (SPAdes)EnvironmentalOpen in IMG/M
3300028008Seawater microbial communities from Monterey Bay, California, United States - 1D_rEnvironmentalOpen in IMG/M
3300028128Seawater microbial communities from Monterey Bay, California, United States - 57DEnvironmentalOpen in IMG/M
3300028131Seawater microbial communities from Monterey Bay, California, United States - 53DEnvironmentalOpen in IMG/M
3300028136Seawater microbial communities from Monterey Bay, California, United States - 9DEnvironmentalOpen in IMG/M
3300028397Seawater microbial communities from Monterey Bay, California, United States - 50DEnvironmentalOpen in IMG/M
3300028706Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_100mEnvironmentalOpen in IMG/M
3300032011Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
SI39nov09_135mDRAFT_100947773300000153MarineMKYLILLCFIIAITTCAMARETSSEFYIPSESNAYQGRLIYDSSKEDYPINKMI
SI39nov09_120mDRAFT_101135613300000167MarineMKYLILLCFIIAITTCAMARETSSEFYIPSESNAYQGRLIYDSSKE
SI47jul10_120mDRAFT_104646413300000212MarineMKYLILLCFIIAITTCAMARETSSEFYIPSESNAYQGRLIYDSSKEDYP
SI34jun09_120mDRAFT_105518513300000225MarineMKYLILLCFIIAITTCAMARETSSEFYIPSESNAYQGRLIYDSSKEDYPINKMIKLCEPYTGIDTAQTK
SI34jun09_135mDRAFT_107437513300000226MarineMKYLILLCFIIAITTCAMAQDTSSEFYIPSESNAYQGRLMYDASKEDYPIDKMIKLCEPYTGIDT
BpDRAFT_1026345413300000930Freshwater And MarineMKYLILLCFIIAITTCAMAQDTSSEFYIPSESNAYQGRLMYDASKEDYPIDKMIKLCEPYTGIDTAQTKCKQQ
JGI20151J14362_1011883533300001346Pelagic MarineMKYLILIXFIXAITTCAMAQXTSSEFYIPSESNAYQGRLIYDASKEDYP
JGI20151J14362_1019043613300001346Pelagic MarineMKYLXLLCFIIAITTCAMAHDKSSEIYIPSESNAYQGRLIYDSSKEEYPIDK
JGI20151J14362_1021429133300001346Pelagic MarineMKYLILMCFVIAIATCAMAGDSKSEFFEPSESNAYQGRLFYDASKEDYP
JGI20160J14292_1023497523300001349Pelagic MarineMKYLILLCFIIAITTCAMAHDKSPEFYIPSESNAYQGRLIYDSSNEDYPIDKM
JGI20159J14440_1003871573300001353Pelagic MarineMCFVIXIATCAMAGDSKSEFFEPSESNAYQGRLFYDASKEDYPIDKMMKLC
JGI20155J14468_1021532213300001354Pelagic MarineMKYLILMCFVIAIATCAMAGDSKSEFFEPSESNAYQGRLLYDASKEDYP
JGI20158J14315_1014186933300001355Pelagic MarineMCFVIAIATCAMAGDSKSEFFEPSESNAYQGRLLYDASKEDYPID
JGI26239J51126_108535523300003498MarineMKYLILLCFIIAITTCAMARETSSEFYIPSESNAYQGRLIYDSSKEDYPINKMIK
Ga0066609_1011912433300004278MarineMKYLILLCFIIAITTCAMARETSSEFYIPSESNAYQGRLIYDSSKEDYPINKMIKLCEPYTGIDTAQTKCK
Ga0066605_1014875513300004279MarineMKYLILLCFIIAITTCAMAHDKSSEFYIPSESNAYQGRLIYDS
Ga0075468_1013186813300007229AqueousMCFVIAIATCAMAGDSKSEFFEPSESNAYQGRLLYDASKEDYPIDKMMKLCKAY
Ga0102869_120842423300007627EstuarineMKYLILICFIIAITTCAMAQDKSSEFYIPSESNAYQGRLMYDSSK
Ga0105744_118429713300007863Estuary WaterMKYLILICFIIAITTCAMAQDTSSEFYIPSESNAYQGRLIYDASKEDYPIDKMI
Ga0102909_116429913300009050EstuarineMKYLILLCFIIAITTCAMAQDTSSEFYIPSESNAYQGRLIYDASKEDYPID
Ga0115566_1080096313300009071Pelagic MarineMKYLILLCFIIAITTCAMAHDKSSEIYIPSESNAYQGRLIYDSSKEEYPIDKM
Ga0115550_130869613300009076Pelagic MarineMCFIIAIATCAMAGDSKSEFFEPSESNTYQGRLLYDASKEDYPIDKMMKLCKAYTGVDTAQTKCKKQNQSS
Ga0115552_115836343300009077Pelagic MarineMCFVIAIATCAMAGDSKSEFFEPSESNAYQGRLLYDAS
Ga0102815_1040396313300009080EstuarineMKYLILLCFIIAITTCAMAQDTSSEFYIPSESNAYQGRL
Ga0102815_1084912013300009080EstuarineMKYLILICFITAITTCAMAQDTSSEFYIPSESNAYQGRLIYDA
Ga0114995_1013331743300009172MarineMCFIIAITTCAMAGDKNSEFYEPSDSNAYQGRLLYNSSKEVYPIDKMIKLCEPYTGIDTAQTK
Ga0115551_117129233300009193Pelagic MarineMKYVILICFISAITTCAMAQDTSSEFYIPSESNDYQGRLIYDASKEDYPIDKMIKLCEPYTGIDTAQTKCKQQN
Ga0114994_1068868533300009420MarineMKYLILICFIVAITTCAMAGNSVSEFYEPSDSNAYQGRLLYNSSKEVYPIDKM
Ga0114994_1109772623300009420MarineMCFIIAITTCAMAGDTNSEFYEPSDSNAYQGRLLYNSSKEVYPIDKMIKLCEPYTGIDTAQTK
Ga0115562_131364623300009434Pelagic MarineMKYLILICFIIAITTCAMAQDTSSEFYIPSESNAYQGRLIYDASKEDY
Ga0115560_110257713300009447Pelagic MarineMCFVIAIATCAMAGDSKSEFFEPSESNAYQGRLLY
Ga0115565_1049432113300009467Pelagic MarineMKYLILLCFIIAITTCAMAQDKSAEFYIPSESNAYQGRLMYDSSKEDYPI
Ga0115554_121267333300009472Pelagic MarineMCFVIAIATCAMAGDSKSEFFEPSESNTYQGRLLYDASKEDYPIDKMMKLCKAYTGVDTAQTKCKKQN
Ga0115554_125965233300009472Pelagic MarineMCFVISIATCAMAGDSKSEFFEPSESNAYQGRLFYDASK
Ga0115571_108974013300009495Pelagic MarineMCFVIAIATCAMAGDSKSEFFEPSESNAYQGRLFYDASKEDYPIDKMMKL
Ga0115564_1026165713300009505Pelagic MarineMAHDKSSEFYIPSESNAYQGRLMYDSSKEDYPIDKMIKLCEPYTGIDTAQTKCKQQSQQSMVI
Ga0115567_1088580423300009508Pelagic MarineMCFVIAIATCAMAGDSKSEFFEPSESNTYQGRLLYDASKEDYPIDKMMKLCKAYTGVDTAQTKCKK
Ga0129331_138024463300012524AqueousMCFVIAIATCAMAGDSKSEFFEPSESNAYQGRLLYDASKEDYPI
Ga0129332_120439943300012969AqueousMKYLILLCFIIAITTCAMAQDKSAEFYIPSESNAYQGRLMYDSSKEDYPIDKMIKLCEPYTGIDTAQTKC
Ga0129332_142314663300012969AqueousMCFVIAIATCAMAGDSKSEFFEPSESNAYQGRLFYDASKEDYPIDKMMKLCKAYTGV
Ga0182052_117986533300016742Salt MarshMKYLIIICFIISIATCAMAGDLNSKSYEPSEANAYQGRLLYDSSEESYPIDK
Ga0181388_105287133300017724SeawaterMKYLILLCFIIAITTCAMAHDKSSEFYIPSESNAYQGRLIYD
Ga0181410_121650623300017763SeawaterMKYLILLCFIIAITTCAMAHDTSSESYIPSESNTYQGRLIYDSSKEVYPIDKMIKLCEPY
Ga0181394_114394333300017776SeawaterMKYLILLCFIIAITTCAMAHDKSSEFYIPSESNAYQGRLIYDSSKEDYPIDKMIKLCE
Ga0181563_1029685833300018420Salt MarshMKYLIIFCFIISIATCAMAGDLNPKSYEPSEENAYQGRLLYDSSEESYPIDKMMKLCDQYTGIDTAQIKCKEYGKGSLK
Ga0206125_1028734313300020165SeawaterMKYLILLSFIIAITTCAMAHDKSPEFYIPSESNAYQGRLIYDSSNEDYP
Ga0206127_117119933300020169SeawaterMKYLILICFISAITTCAMAQDTSSEFYIPSESNAYQGRLIYDASKEDYPIDKMIKLCEPYTGIDTA
Ga0206124_1040271613300020175SeawaterMKYLILMCFVIAIATCAMAGDSKSEFFEPSESNTYQGRLLYDA
Ga0181597_1021312013300020194Salt MarshMKYLIIICFIISIATCAMAGDLNSKSYEPSEANAYQGRLLYDSSEESYPIDKMMKLCDQYTGIDTAQIKCKEYG
Ga0211677_1020721113300020385MarineMKYLILICFIIAITTCAMAQDTSSEFYIPSESNAYQGRLIYDASKEDYPIDKMIKLCEPYTGIDTAQTKCKQQSQ
Ga0211576_1039154413300020438MarineMKYLILLCFIIAITTCAMAHDTSSESYIPSESNTYQGRLIYDSSKEVYPIDKMIKL
Ga0206126_1040675213300020595SeawaterMKYLILICFISAITTCAMAQDTSSEFYIPSESNAYQGRLIYDASKEDYPIDKMIKLCEP
Ga0206677_1034163013300021085SeawaterMKYLILLCFIIAITTCAMAHDTSSEFYIPSESNAYQGRLIYDSSKEVYPI
Ga0206123_1019779713300021365SeawaterMKYLILLCFIIAITTCAMAHDKSPEFYIPSESNAYQGRLIYDSSNEDYP
Ga0213863_1027949113300021371SeawaterMCFVIAIATCAMAGDSKSEFFEPSESNAYQGRLFYDAS
Ga0213868_1015773653300021389SeawaterMKYLILMCFVIAIATCAMAGDSKSEFFEPSESNAYQGRLLYDAS
Ga0222718_1012519113300021958Estuarine WaterMCFVIAIATCAMAGDSKSEFFEPSESNAYQGRLLYDASKEDYPIDKMMKLCKAYTGVDTAQTKC
Ga0222716_1067600713300021959Estuarine WaterMKFLILLCFIIAITTCAMAHDKSSEFYIPSESNAYQGRLIYDSSKEEYPIDKMIKLCEPYTGIDTAQT
(restricted) Ga0233431_105490053300022916SeawaterMKYLILLCFIIAITTCAMAQDTSSEFYIPSESNAYQGRLMYDASKEDYPIDKMIKLCEP
Ga0255779_134736813300022922Salt MarshMKYLIIICFIISIATCAMAGDLNSKSYEPSEANAYQGRLLYDSSEESYPINKMMKLCDQYTGIDTAQIKCKE
(restricted) Ga0233433_1015244913300022931SeawaterMKYLILLCFIIAITTCAMARETSSEFYIPSESNAYQGRLIYDSSKEDYPINKMIKLCEPYTGIDTAQTKCKKQ
(restricted) Ga0233432_1020232713300023109SeawaterMKYLILLCFIIAITTCAMAHDKSSEFYIPSESNAYQG
Ga0228682_105584223300023698SeawaterMKYLILLCFIIAITTCAMAHDKSSEIYIPSESNAYQGRLIYD
Ga0228633_112884113300024228SeawaterMKYLILLCFITAITTCAMAHDKSPEFYIPSESNAYQGRLIYDSSNEDYPIDKMIKLCEPYTGI
Ga0228673_109748223300024242SeawaterMKYLILLCFITAITTCAMAHDKSPEFYIPSESNAYQGRLIYDSSNEDYPI
(restricted) Ga0233437_112776943300024259SeawaterMKYLILLCFIIAITTCAMAQDTSSEFYIPSESNAYQ
Ga0228651_112413213300024293SeawaterMKYLILICFITAITTCAMAQDTSSEFYIPSESNAYQGKLIYDASKEDYPIDKMIKLCEPYTGIDTAQTK
Ga0228672_112927213300024335SeawaterMKYLILLCFIIAITTCAMAHDKSSEFYIPSESNAYQGR
Ga0244776_1047212813300024348EstuarineMKYLILICFITAITTCAMAQDTSSEFYIPSESNAYQGRLIYDASKEDYPIDKMIKLCEPY
Ga0228662_105228813300024415SeawaterMKYLILLCFIIAITTCAMAHDKSSEFYIPSESNAYQGRLIYDSSNEDYPIDKMIKLCEPYTGIDTAQ
Ga0209634_125702523300025138MarineMKYLILICFIVAITTCAMAGNSVSEFYEPSDSNAYQGRLLYNSSKEVYPIDKMIKLCEPYTGIDTAQTKCKQ
Ga0209405_118591223300025620Pelagic MarineMKYLILLCFIIAITTCAMAQDKSAEFYIPSESNAYQGR
Ga0209264_113993813300025622MarineMKYLILLCFIIAITTCAMARETSSEFYIPSESNAYQGRLIYDSSKEDYPINKMIKLCEPYTGIDT
Ga0209041_104942743300025623MarineMKYLILLCFIIAITTCAMARETSSESYIPSESNAYQGRLIYDSSKEDYPIDKMIKLCE
Ga0209716_108354033300025626Pelagic MarineMKYLILICFITAITTCAMAQDTSSEFYIPSESNAYQGR
Ga0209198_118804413300025640Pelagic MarineMKYLILLCFIIAITTCAMAHDKSPELYIPSESNAYQGRLIYDSS
Ga0209151_115395323300025643MarineMKYLILLCFIIAITTCAMARETSSEFYIPSESNAYQGR
Ga0209251_107637333300025668MarineMKYVILICFITAITTCAMAQDTSSEFYTPSESNAYQGRLMYDSSKEDYPIDKMIKFCEPY
Ga0209140_111483133300025688MarineMKYVILICFITAITTCAMAQDTSSEFYIPSESNAYQGRLMYDASKEDYPIDK
Ga0209715_109766743300025699Pelagic MarineMCFVIAIATCAMAGDSKSEFFEPSESNTYQGRLLYDASKEDYPIDKMMKLCKAYTGVD
Ga0209374_104961143300025705MarineMKYLILLCFIIAITTCAMAHDTSSEFYIPSESNAYQGRLIYDSSKEVYPIDKMIKLCEPYTGIDTAQT
Ga0209362_115796933300025770MarineMKYLILLCFIIAITTCAMAHDTSSEFYIPSESNAYQGRLIYDSSKEVYPIDKMIKLCEPYTGIDTAQTKCK
Ga0209199_110243813300025809Pelagic MarineMKYLILLCFIIAITTCAMAHDKSPEFYIPSESNAYQGRL
Ga0209600_107417743300025821Pelagic MarineMCFVIAIATCAMAGDSKSEFFEPSESNAYQGRLLYDASKEDYPIDKMMKLCKAYTGV
Ga0209119_119773633300025860Pelagic MarineMKYLILICFIIAITTCAMAQETSSEFYIPSESNAYQGRLIYDASKEDYPIDKMIKLCEPYTG
Ga0209533_113989143300025874Pelagic MarineMKYLILICFISAITTCAMAQDTSSEFYIPSESNAYQGRLIYDASKEDYPIDKMIKL
Ga0209533_125945313300025874Pelagic MarineMCFVIAIATCAMAGDSKSEFFEPSESNAYQGRLLYDASKEDYPIDKMMKLC
Ga0209309_1022523733300025881Pelagic MarineMCFVIAIATCAMAGDSKSEFFEPSESNAYQGRLLYDASKEDYPIDKMMK
Ga0209631_1020712913300025890Pelagic MarineMKYLILICFITAITTCAMAQDTSSEFYIPSESNAYQGRLIYDASKEDY
Ga0209631_1042707513300025890Pelagic MarineMKYLILLCFIIAITTCAMAHDKSSEIYIPSESNAYQGRLIYDSSKEEYPIDKMIKLCEPY
Ga0209631_1053333523300025890Pelagic MarineMKYLILFCFIIAITTCAMAHDSSSEFYIPSESNAYQGRLIYDASKEVYPIDKMIKL
Ga0209630_1036067713300025892Pelagic MarineMKYLILLCFIIAITTCAMAHDKSSEIYIPSESNAYQGRLIYDSSKEEYPIDKMIKLCEPYTGI
Ga0209335_1037463023300025894Pelagic MarineMKYLILMCFVIAIATCAMAGDSKSEFFEPSESNAYQGRLLYDASKEDYPIDKMMK
Ga0228622_111986413300026479SeawaterMKYLILICFITAITTCAMAQDTSSEFYIPSESNAYQGRLIYDASKEDYPIDKMI
Ga0208680_107625723300027253EstuarineMKYLILLCFIIAITTCAMAQDTSSEFYIPSESNAYQGRLMYDASKEDYPIDKMIKLCELY
Ga0228674_118259823300028008SeawaterMKYLILLCFIIAITTCAMAHDKSSEFYIPSESNAYQGRLIYDSSKEDYPIDKMIK
Ga0228645_114330123300028128SeawaterMKYLILLCFIIAITTCAMAHYKSPEFYIPSESNAYQGRLIYDSSKE
Ga0228642_106817513300028131SeawaterMKYLILICFITAITTCAMAQDTSSEFYIPSESNAYQGRLIYDASKEDYPIDKMIKLCEPYTGIDT
Ga0228642_116706423300028131SeawaterMKYLILLCFIVAITTCAMAHDKSSEFYIPSESNAYQGRL
Ga0228608_120332523300028136SeawaterMKYLILLCFITAITTCAMAHDKSPEFYIPSESNAYQGRLIYDSSNEDY
Ga0228639_113916723300028397SeawaterMKYLILLCFIIAITTCAMAHDKSSEFYIPSESNTYQG
Ga0257115_110808733300028706MarineMKYLILLCFIIAITTCAMARETSSESYIPSESNAYQGRLIYDS
Ga0315316_1071832833300032011SeawaterMKYLILLCFIIAITTCAMAHDTSSEFYIPSESNAYQGRLIYDSSKEVYPIDK


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.