Scaffold Ga0209199_1001465

Overview

Basic Information

• Taxon OID: 3300025809
• Scaffold ID: Ga0209199_1001465
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28227
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (13.46%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010473	Metagenome / Metatranscriptome	303	Y
F026713	Metagenome / Metatranscriptome	197	Y
F088709	Metagenome / Metatranscriptome	109	N
F093884	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209199_100146516	F093884	N/A	MKINEALWHELKKAIENGTKKDSSITDITIKFRIAENAVHRNYLQFNLSQYGE
Ga0209199_100146522	F010473	N/A	MRLLGYEIRLGVFKGVLFGIRHYPFEDLEIYEEDIVIYFGIFQLVITRIYQK
Ga0209199_10014653	F088709	GGA	MVGINFSQETARSVIEQYEFRVDALLKKIDFLEAKLEVSKQIFKNR
Ga0209199_100146532	F026713	N/A	MEWYDSLNPLEQDEFECSECGAPIATDKQYCSQSCFSASMR