NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F088709

Metagenome / Metatranscriptome Family F088709

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F088709
Family Type Metagenome / Metatranscriptome
Number of Sequences 109
Average Sequence Length 46 residues
Representative Sequence MGINYSTETSKSIIEEYEFRIEALLKKIEFLEAQIEVSKEIFKNR
Number of Associated Samples 91
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 2.75 %
% of genes near scaffold ends (potentially truncated) 34.86 %
% of genes from short scaffolds (< 2000 bps) 80.73 %
Associated GOLD sequencing projects 79
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (85.321 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater
(19.266 % of family members)
Environment Ontology (ENVO) Unclassified
(56.881 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(84.404 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 80.00%    β-sheet: 0.00%    Coil/Unstructured: 20.00%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 109 Family Scaffolds
PF05766NinG 22.02
PF13481AAA_25 3.67
PF01402RHH_1 1.83
PF08299Bac_DnaA_C 1.83
PF08291Peptidase_M15_3 0.92
PF11325DUF3127 0.92
PF13385Laminin_G_3 0.92
PF03382DUF285 0.92
PF027395_3_exonuc_N 0.92
PF04860Phage_portal 0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 109 Family Scaffolds
COG0593Chromosomal replication initiation ATPase DnaAReplication, recombination and repair [L] 1.83
COG02585'-3' exonuclease Xni/ExoIX (flap endonuclease)Replication, recombination and repair [L] 0.92


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A85.32 %
All OrganismsrootAll Organisms14.68 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10053087All Organisms → Viruses → Predicted Viral2009Open in IMG/M
3300000101|DelMOSum2010_c10153697Not Available839Open in IMG/M
3300000127|SA_S1_NOR05_45mDRAFT_c10037034Not Available1338Open in IMG/M
3300000928|OpTDRAFT_10037160All Organisms → Viruses → Predicted Viral1625Open in IMG/M
3300000947|BBAY92_10012561All Organisms → Viruses → Predicted Viral2273Open in IMG/M
3300001348|JGI20154J14316_10070279Not Available1301Open in IMG/M
3300001352|JGI20157J14317_10159519Not Available691Open in IMG/M
3300001352|JGI20157J14317_10222039Not Available525Open in IMG/M
3300003580|JGI26260J51721_1038669Not Available802Open in IMG/M
3300003580|JGI26260J51721_1040329Not Available775Open in IMG/M
3300004097|Ga0055584_100603408Not Available1146Open in IMG/M
3300004279|Ga0066605_10113171Not Available1112Open in IMG/M
3300005588|Ga0070728_10600606Not Available569Open in IMG/M
3300005609|Ga0070724_10343813All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes657Open in IMG/M
3300005612|Ga0070723_10122894All Organisms → Viruses → Predicted Viral1129Open in IMG/M
3300006752|Ga0098048_1049837Not Available1318Open in IMG/M
3300006752|Ga0098048_1100008Not Available878Open in IMG/M
3300006793|Ga0098055_1110853Not Available1068Open in IMG/M
3300006802|Ga0070749_10024199Not Available3827Open in IMG/M
3300006803|Ga0075467_10484708All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes637Open in IMG/M
3300006810|Ga0070754_10000811Not Available27094Open in IMG/M
3300006920|Ga0070748_1000176Not Available33489Open in IMG/M
3300006990|Ga0098046_1089222Not Available689Open in IMG/M
3300009002|Ga0102810_1035710Not Available1626Open in IMG/M
3300009003|Ga0102813_1008329Not Available4158Open in IMG/M
3300009024|Ga0102811_1110856Not Available1027Open in IMG/M
3300009076|Ga0115550_1136968Not Available867Open in IMG/M
3300009079|Ga0102814_10246108Not Available973Open in IMG/M
3300009086|Ga0102812_10310575Not Available858Open in IMG/M
3300009433|Ga0115545_1254940Not Available588Open in IMG/M
3300009434|Ga0115562_1221638Not Available669Open in IMG/M
3300009440|Ga0115561_1377411Not Available519Open in IMG/M
3300009442|Ga0115563_1208654Not Available747Open in IMG/M
3300009442|Ga0115563_1245801Not Available668Open in IMG/M
3300009442|Ga0115563_1349468Not Available532Open in IMG/M
3300009467|Ga0115565_10476896Not Available561Open in IMG/M
3300009505|Ga0115564_10011250Not Available6484Open in IMG/M
3300009505|Ga0115564_10608635Not Available515Open in IMG/M
3300009505|Ga0115564_10625797Not Available505Open in IMG/M
3300010149|Ga0098049_1126409Not Available794Open in IMG/M
3300010149|Ga0098049_1256356Not Available531Open in IMG/M
3300010392|Ga0118731_107666622Not Available516Open in IMG/M
3300010392|Ga0118731_107668044Not Available657Open in IMG/M
3300010430|Ga0118733_100996995All Organisms → Viruses → Predicted Viral1672Open in IMG/M
3300010430|Ga0118733_102042489Not Available1139Open in IMG/M
3300010430|Ga0118733_104815132Not Available716Open in IMG/M
3300011253|Ga0151671_1026359Not Available1858Open in IMG/M
3300017709|Ga0181387_1002665Not Available3613Open in IMG/M
3300017735|Ga0181431_1008598Not Available2475Open in IMG/M
3300019751|Ga0194029_1018355All Organisms → Viruses → Predicted Viral1054Open in IMG/M
3300020165|Ga0206125_10025176Not Available3405Open in IMG/M
3300020165|Ga0206125_10101299Not Available1221Open in IMG/M
3300020165|Ga0206125_10168549Not Available869Open in IMG/M
3300020185|Ga0206131_10070586Not Available2173Open in IMG/M
3300020185|Ga0206131_10142174Not Available1275Open in IMG/M
3300020187|Ga0206130_10224091Not Available878Open in IMG/M
3300020347|Ga0211504_1049238Not Available1009Open in IMG/M
3300020595|Ga0206126_10061499Not Available1981Open in IMG/M
3300021085|Ga0206677_10031093All Organisms → Viruses → Predicted Viral3001Open in IMG/M
3300021169|Ga0206687_1224217All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon1123Open in IMG/M
3300021185|Ga0206682_10472672Not Available520Open in IMG/M
3300021371|Ga0213863_10002620Not Available12672Open in IMG/M
3300021373|Ga0213865_10228864Not Available903Open in IMG/M
3300021957|Ga0222717_10094895Not Available1869Open in IMG/M
3300021960|Ga0222715_10330118All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes856Open in IMG/M
3300022061|Ga0212023_1035282Not Available695Open in IMG/M
3300022178|Ga0196887_1095214Not Available674Open in IMG/M
(restricted) 3300023112|Ga0233411_10094235Not Available956Open in IMG/M
(restricted) 3300023210|Ga0233412_10035582All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2003Open in IMG/M
3300023567|Ga0228694_106471All Organisms → Viruses → Predicted Viral1230Open in IMG/M
3300024183|Ga0228603_1024584Not Available853Open in IMG/M
3300024185|Ga0228669_1005594All Organisms → Viruses → Predicted Viral3618Open in IMG/M
3300024191|Ga0228636_1140604Not Available527Open in IMG/M
3300024228|Ga0228633_1095165Not Available699Open in IMG/M
3300024229|Ga0233402_1044841Not Available942Open in IMG/M
(restricted) 3300024264|Ga0233444_10276466Not Available735Open in IMG/M
3300024266|Ga0228661_1022612Not Available1128Open in IMG/M
3300024319|Ga0228670_1004199Not Available4690Open in IMG/M
3300024321|Ga0228626_1105236Not Available608Open in IMG/M
3300024346|Ga0244775_10396496Not Available1135Open in IMG/M
3300025070|Ga0208667_1003616All Organisms → Viruses → Predicted Viral4611Open in IMG/M
3300025083|Ga0208791_1042150Not Available821Open in IMG/M
3300025620|Ga0209405_1142403Not Available629Open in IMG/M
3300025621|Ga0209504_1116120Not Available679Open in IMG/M
3300025637|Ga0209197_1200936Not Available501Open in IMG/M
3300025640|Ga0209198_1009943Not Available5025Open in IMG/M
3300025645|Ga0208643_1001069Not Available16132Open in IMG/M
3300025645|Ga0208643_1038133Not Available1541Open in IMG/M
3300025809|Ga0209199_1001465Not Available28227Open in IMG/M
3300025832|Ga0209307_1129001Not Available783Open in IMG/M
3300025832|Ga0209307_1130937Not Available775Open in IMG/M
3300025870|Ga0209666_1126827All Organisms → Viruses → Predicted Viral1194Open in IMG/M
3300025887|Ga0208544_10266373Not Available679Open in IMG/M
3300026453|Ga0228644_1048709Not Available802Open in IMG/M
3300026460|Ga0247604_1122237Not Available577Open in IMG/M
3300026470|Ga0247599_1091719Not Available636Open in IMG/M
3300026500|Ga0247592_1089089Not Available746Open in IMG/M
3300026506|Ga0228604_1073783Not Available574Open in IMG/M
3300027159|Ga0208020_1065921Not Available658Open in IMG/M
3300027751|Ga0208304_10259746Not Available614Open in IMG/M
3300027757|Ga0208671_10356813Not Available511Open in IMG/M
3300028126|Ga0228648_1028331Not Available1011Open in IMG/M
3300028126|Ga0228648_1049423Not Available780Open in IMG/M
3300028135|Ga0228606_1170508Not Available528Open in IMG/M
3300028280|Ga0228646_1034473Not Available1260Open in IMG/M
3300028336|Ga0247583_1105014Not Available588Open in IMG/M
3300032088|Ga0315321_10046974Not Available3035Open in IMG/M
3300032257|Ga0316205_10349421Not Available509Open in IMG/M
3300032277|Ga0316202_10526423Not Available556Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater19.27%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine16.51%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous8.26%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine7.34%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine7.34%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater6.42%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment5.50%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine3.67%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.75%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine2.75%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater2.75%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine1.83%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat1.83%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.83%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water1.83%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine1.83%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater1.83%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.92%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.92%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.92%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine0.92%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine0.92%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine0.92%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface0.92%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000127Marine microbial communities from chronically polluted sediments in Adventfjord, Norway - Svalbard Archipelago station 1 sample NOR 05_45mEnvironmentalOpen in IMG/M
3300000928Marine plume microbial communities from the Columbia River - 25 PSUEnvironmentalOpen in IMG/M
3300000947Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92Host-AssociatedOpen in IMG/M
3300001348Pelagic Microbial community sample from North Sea - COGITO 998_met_04EnvironmentalOpen in IMG/M
3300001352Pelagic Microbial community sample from North Sea - COGITO 998_met_07EnvironmentalOpen in IMG/M
3300003580Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNAEnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300004279Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10mEnvironmentalOpen in IMG/M
3300005588Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.1EnvironmentalOpen in IMG/M
3300005609Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.1EnvironmentalOpen in IMG/M
3300005612Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2EnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNAEnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300006990Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaGEnvironmentalOpen in IMG/M
3300009002Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573EnvironmentalOpen in IMG/M
3300009003Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725EnvironmentalOpen in IMG/M
3300009024Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705EnvironmentalOpen in IMG/M
3300009076Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511EnvironmentalOpen in IMG/M
3300009079Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741EnvironmentalOpen in IMG/M
3300009086Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009434Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516EnvironmentalOpen in IMG/M
3300009440Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512EnvironmentalOpen in IMG/M
3300009442Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519EnvironmentalOpen in IMG/M
3300009467Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530EnvironmentalOpen in IMG/M
3300009505Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523EnvironmentalOpen in IMG/M
3300010149Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaGEnvironmentalOpen in IMG/M
3300010392Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385EnvironmentalOpen in IMG/M
3300010430Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samplesEnvironmentalOpen in IMG/M
3300011253Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeateEnvironmentalOpen in IMG/M
3300017709Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27EnvironmentalOpen in IMG/M
3300017735Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21EnvironmentalOpen in IMG/M
3300019751Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MGEnvironmentalOpen in IMG/M
3300020165Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1EnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300020187Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1EnvironmentalOpen in IMG/M
3300020347Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)EnvironmentalOpen in IMG/M
3300020595Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300021169Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021185Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015EnvironmentalOpen in IMG/M
3300021371Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497EnvironmentalOpen in IMG/M
3300021373Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300022061Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)EnvironmentalOpen in IMG/M
3300022178Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)EnvironmentalOpen in IMG/M
3300023112 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_2_MGEnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300023567Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 80R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024183Seawater microbial communities from Monterey Bay, California, United States - 3DEnvironmentalOpen in IMG/M
3300024185Seawater microbial communities from Monterey Bay, California, United States - 84DEnvironmentalOpen in IMG/M
3300024191Seawater microbial communities from Monterey Bay, California, United States - 45DEnvironmentalOpen in IMG/M
3300024228Seawater microbial communities from Monterey Bay, California, United States - 41DEnvironmentalOpen in IMG/M
3300024229Seawater microbial communities from Monterey Bay, California, United States - 54DEnvironmentalOpen in IMG/M
3300024264 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MGEnvironmentalOpen in IMG/M
3300024266Seawater microbial communities from Monterey Bay, California, United States - 75DEnvironmentalOpen in IMG/M
3300024319Seawater microbial communities from Monterey Bay, California, United States - 85DEnvironmentalOpen in IMG/M
3300024321Seawater microbial communities from Monterey Bay, California, United States - 31DEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025083Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025620Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)EnvironmentalOpen in IMG/M
3300025621Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes)EnvironmentalOpen in IMG/M
3300025637Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512 (SPAdes)EnvironmentalOpen in IMG/M
3300025640Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519 (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025809Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523 (SPAdes)EnvironmentalOpen in IMG/M
3300025832Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530 (SPAdes)EnvironmentalOpen in IMG/M
3300025870Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025887Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300026453Seawater microbial communities from Monterey Bay, California, United States - 56DEnvironmentalOpen in IMG/M
3300026460Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 85R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026470Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 73R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026500Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 54R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026506Seawater microbial communities from Monterey Bay, California, United States - 4DEnvironmentalOpen in IMG/M
3300027159Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573 (SPAdes)EnvironmentalOpen in IMG/M
3300027751Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713 (SPAdes)EnvironmentalOpen in IMG/M
3300027757Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 (SPAdes)EnvironmentalOpen in IMG/M
3300028126Seawater microbial communities from Monterey Bay, California, United States - 60DEnvironmentalOpen in IMG/M
3300028135Seawater microbial communities from Monterey Bay, California, United States - 7DEnvironmentalOpen in IMG/M
3300028280Seawater microbial communities from Monterey Bay, California, United States - 58DEnvironmentalOpen in IMG/M
3300028336Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 42R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300032088Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515EnvironmentalOpen in IMG/M
3300032257Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyriteEnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1005308753300000101MarineMGINYSTQTSKSIIEEYEFRIKALLKKIEFLEAQLEVSKQFK*
DelMOSum2010_1015369723300000101MarineMGINYSTETSKSIIEEYEFRINALLKKIEFLEAQLEVSKQFK*
SA_S1_NOR05_45mDRAFT_1003703433300000127MarineMGTNYSAETSKSIITEYEFRVKALLEKIEFLEAQIELSTSIYKY*
OpTDRAFT_1003716053300000928Freshwater And MarineMVGINFSQETTSSTVQQYEFRIEALLKKIEFLEAQIEVSKEFFKYR*
BBAY92_1001256123300000947Macroalgal SurfaceMVGINFSQETTNSVVEQYEFRIDALLKKIEFLEAQIEVSKQIFKYK*
JGI20154J14316_1007027913300001348Pelagic MarineKIRNSKINFIKFRLMGINYSTETSKSIIEEYEFRIEALLKKIEFLEAQIEVSKEIFKNR*
JGI20157J14317_1015951933300001352Pelagic MarineSKINFIKFRLMGINYSTETSKSIIEEYEFRINALLKKIEFLEAQLEVSKQIFK*
JGI20157J14317_1022203923300001352Pelagic MarineNFIKFRLMGINYSTETSKSIIEEYEFRIEALLKKIEFLEAQIEVSKEIFKNR*
JGI26260J51721_103866913300003580MarineMGINYSTETSKSIIEEYEFRIKALLKKIEFLEAQIEVSKQIFK*
JGI26260J51721_104032913300003580MarineMGINYSTETSKSIIEEYEFRINALLKKIEFLEAQLEVSNQFK*
Ga0055584_10060340813300004097Pelagic MarineMGINYSTETSKSIIEEYEFRIEALLKKIEFLEAQIEVSKEIFKNR*
Ga0066605_1011317113300004279MarineMGTNYSQETAQSIIEQYKFRVEALSNKIEFLQAQLEVSKQIFKDRING*
Ga0070728_1060060613300005588Marine SedimentMGINYSTETSKSIIDEYEFRIQALLKKIEFLEAQIEVSKEIFKNR*
Ga0070724_1034381333300005609Marine SedimentMGINYSTETSKSIIEEYEFRINALLKKIEFLEAQLEVSKQ
Ga0070723_1012289443300005612Marine SedimentMGINYSTETSKSIIEEYEFRINALLKKIEFLEAQLEVSKQIFK*
Ga0098048_104983713300006752MarineMVGINFSQQTTNSVVEQYEFRIDALLKKIEFLEAQIEVSKEFFKY
Ga0098048_110000813300006752MarineFSQQTTNSVVEQYEFRIDALLKKIEFLEAQIEVSKEFFKYK*
Ga0098055_111085333300006793MarineMVGINFSQQTTNSVVEQYEFRIDALLKKIEFLEAQIEVSKEFFKYK*
Ga0070749_10024199103300006802AqueousMGINYSTETSKSIIEEYEFRINALLKKIEFLEAQIEVSKQIFK*
Ga0075467_1048470823300006803AqueousMGINYSTETSKSIIEEYEFRIQALLKKIEFLEAQIEVSKEFFKNR*
Ga0070754_10000811103300006810AqueousMGINYSTETSKSIIEEYEFRINALLKKIEFLEAQIEVSKQIFKDR*
Ga0070748_1000176413300006920AqueousMGINYSTETSKTIIEEYEFRIEALLKKIEFLEAQIEVSKEFFKYR*
Ga0098046_108922213300006990MarineNSVVEQYEFRIDALLKKIEFLEAQIEVSKEFFKYR*
Ga0102810_103571043300009002EstuarineMVGINFSQETARSVIEQYEFRVGALLKKIEFLEAQLEVSKQIFKNR*
Ga0102813_1008329123300009003EstuarineMVSINFSQQTTSSTVQQYEFRIEALLKKIEFLEAQIEVSKQIFKYR*
Ga0102811_111085613300009024EstuarineMVRINFSQETTSSLTQQYEFRIDALLKNIECLKAQLEIVNNKINIE*
Ga0115550_113696813300009076Pelagic MarineSIIEEYEFRIEALLKKIEFLEAQIEVSKEIFKNR*
Ga0102814_1024610833300009079EstuarineMVGINFSQQTTSSTVQQYEFRIEALLKKIEFLEAQIEVSKQIFKYR*
Ga0102812_1031057513300009086EstuarineGINFSQQTTSSTVQQYEFRIEALLKKIEFLEAQIEVSKQIFKYR*
Ga0115545_125494023300009433Pelagic MarineGYLQKIRDSKINFIKFRLMGINYSTETSKSIIEEYEFRINALLKKIEFLEAQLEVSKQIFK*
Ga0115562_122163833300009434Pelagic MarineSNGYLQKIRDSKINFIKFRLMGINYSTETSKSIIEEYEFRINALLKKIEFLEAQLEVSKQIFK*
Ga0115561_137741123300009440Pelagic MarineMGINYSTETSKSIIDEYEFRIQALLKKIEFLEAQIEVSKEFFKNR*
Ga0115563_120865413300009442Pelagic MarineSKINFIKFRLMGINYSTETSKSIIEEYEFRIEALLKKIEFLEAQIEVSKEIFKNR*
Ga0115563_124580113300009442Pelagic MarineINFIKFRLMGINYSTETSKSIIEEYEFRIEALLKKIEFLEAQIEVSKEIFKNR*
Ga0115563_134946813300009442Pelagic MarineKFRLMGINYSTETSKSIIEEYEFRIQALLKKIEFLEAQIEVSKEIFKNR*
Ga0115565_1047689613300009467Pelagic MarineSKINFIKFRLMGINYSTETSKSIIEEYEFRIQALLKKIEFLEAQIEVSKEIFKNR*
Ga0115564_1001125023300009505Pelagic MarineMVGINFSQETARSVIEQYEFRVDALLKKIDFLEAKLEVSKQIFKNR*
Ga0115564_1060863523300009505Pelagic MarineSTETSKSIIEEYEFRIQALLKKIEFLEAQIEVSKEIFKNR*
Ga0115564_1062579713300009505Pelagic MarineYSNGYLQKIRDSKINFIKFRLMGINYSTETSKSIIDEYEFRIQALLKKIEFLEAQIEVSKEFFKNR*
Ga0098049_112640923300010149MarineMGINYSQQTTNSVVEQYEFRIDALLKKIEFLEAQIEVSKEFFKYR*
Ga0098049_125635613300010149MarineTSKSIIEEYEFRIKALLKKIEFLEAQLEVSNQFK*
Ga0118731_10766662223300010392MarineRLMGINYSTETSKSIIEEYEFRINALLKKIEFLEAQLEVSKQFK*
Ga0118731_10766804433300010392MarineRLMGINYSTETSKSIIEEYEFRINALLKKIEFLEAQLEVSKQIFK*
Ga0118733_10099699533300010430Marine SedimentMGINYSTQTSKSIIEEYEFRIKALLKKIEFLEAQIEVSKEFFKYR*
Ga0118733_10204248933300010430Marine SedimentMGINYSSETSKSIIEEYEFRINALLKKIEFLEAQLEVSKQIFK*
Ga0118733_10481513213300010430Marine SedimentKIRDSKINFIKFRLMGINYSTETSKSIIDEYEFRIQALLKKIEFLEAQIEVSKEIFKNR*
Ga0151671_102635923300011253MarineMVGINFSQQTTNSVVEQYEFRIDALLKKIEFLEAQIEVSKAIFKYR*
Ga0181387_100266553300017709SeawaterMGINYSTETSKSIIEEYEFRINALLKKIEFLEAQLEVLNQFK
Ga0181431_100859863300017735SeawaterMVGINFSQETSKSIIEEYEYRIQALLKKIEFLEAQLEVSKEIFKNR
Ga0194029_101835533300019751FreshwaterMGINYSTETSKSIIEEYEFRINALLKKIEFLEAQIEVSKQIFK
Ga0206125_1002517693300020165SeawaterMGINYSTETSKSIIEEYEFRIEALLKKIEFLEAQIEVSKEIFKNR
Ga0206125_1010129943300020165SeawaterMGINYSTETSKSIIEEYEFRIKALLKKIEFLEAQLEVSNQIFK
Ga0206125_1016854933300020165SeawaterMGINYSTETSKSIIEEYEFRINALLKKIEFLEAQLEVSKQIFK
Ga0206131_1007058673300020185SeawaterMGINYSTETSKSIIEEYEFRIEALLKKIEFLEAQLEVSKEIFKNR
Ga0206131_1014217463300020185SeawaterRLMGINYSTETSKSIIEEYEFRIEALLKKIEFLEAQIEVSKEIFKNR
Ga0206130_1022409133300020187SeawaterMGINYSTETSKSIIEEYEFRINALLKKIEFLEAQLEVSKQIFKDR
Ga0211504_104923843300020347MarineMGINYSTQTSKSIIEEYEFRIKALLKKIEFLEAQLEVSNQFK
Ga0206126_1006149983300020595SeawaterSKSIIEEYEFRIEALLKKIEFLEAQIEVSKEIFKNR
Ga0206677_1003109383300021085SeawaterMVGINFSQETTSSTVQQYEFRIEALLKKIEFLEAQIEVSKEFFKYR
Ga0206687_122421713300021169SeawaterMGVNYSQETTKSVVEQYEFRIDALLKRIEFLEAQIEVSKEFFKYR
Ga0206682_1047267213300021185SeawaterMGTNYSQETAQSIIEQYKFRVEALSNKIEFLQAQLEVSKQIFKDRING
Ga0213863_1000262083300021371SeawaterMGINYSTETSKSIIEEYEFRINALLKKIEFLEAQIEVSKQIFKDR
Ga0213865_1022886423300021373SeawaterMGINYSTETSKSIIEEYEFRINALLKKIEFLEAQLEVSKQFK
Ga0222717_1009489513300021957Estuarine WaterMGINYSQQTTNSVVDQYEFRIDALLKKIEFLEAQIEVSKEFFKYR
Ga0222715_1033011813300021960Estuarine WaterETTSSTVQQYEFRIEALLKKIEFLEAQIEVSKEFFKYR
Ga0212023_103528223300022061AqueousMGINYSTETSKSIIEEYEFRINALLKKIEFLEAQIEVSKEIFKNR
Ga0196887_109521423300022178AqueousMGINYSTETSKSIIDEYEFRIQALLKKIEFLEAQIEVSKQIFK
(restricted) Ga0233411_1009423523300023112SeawaterMGINYSTETSKSIIEEYEFRIKALLKKIEFLEAQIEVSKQIFK
(restricted) Ga0233412_1003558243300023210SeawaterMGINYSTETSKTIIEEYEFRIKALLKKIEFLEAQIEVSKEFFKYR
Ga0228694_10647123300023567SeawaterMGINYSTETSKSIIEEYEFRIKALLKKIEFLEAQLEVSNQFK
Ga0228603_102458433300024183SeawaterMGINYSTETSKSIIEEYEFRINALLKKIEFLEAQLEVSNQFK
Ga0228669_100559483300024185SeawaterMGINYSTETSKSIIEEYEFRINALLKKIEFLEAQLEVLNKFK
Ga0228636_114060423300024191SeawaterMGINYSTETSKSIIEEYEFRIKALLKKIEFLEAQLEVLNKFK
Ga0228633_109516513300024228SeawaterMVGINFSQQTTSSTVQQYEFRIEALLKKIEFLEAQIEVSKEFFKYR
Ga0233402_104484113300024229SeawaterLQKIRDSKINFIKFRLMGINYSTETSKSIIEEYEFRIKALLKKIEFLEAQLEVSNQIK
(restricted) Ga0233444_1027646633300024264SeawaterMGINYSTETSKTIIEEYEFRIQALLKKIEFLEAQIEVSKQIFK
Ga0228661_102261243300024266SeawaterTKSVVEQYEFRIDALLKRIEFLEAQIEVSKEFFKYR
Ga0228670_100419983300024319SeawaterMGINYSTETSKSIIEEYEFRIKALLKKIEFLEAQIEVSNQIFK
Ga0228626_110523623300024321SeawaterMVGINFSQETTSSTVQQYEFRIEALLKKIEFLEAQLEVSNQFK
Ga0244775_1039649623300024346EstuarineMVRINFSQETTSSLTQQYEFRIDALLKNIECLKAQLEIVNNKINIE
Ga0208667_100361673300025070MarineMVGINFSQQTTNSVVEQYEFRIDALLKKIEFLEAQIEVSKEFFKYK
Ga0208791_104215023300025083MarineMGINYSQQTTNSVVEQYEFRIDALLKRIEFLEAQIEVSKEFFKYR
Ga0209405_114240313300025620Pelagic MarineSKSIIEEYEFRINALLKKIEFLEAQLEVSKQIFKDR
Ga0209504_111612023300025621Pelagic MarineSTETSKSIIEEYEFRIEALLKKIEFLEAQIEVSKEIFKNR
Ga0209197_120093623300025637Pelagic MarineIKFRLMGINYSTETSKSIIEEYEFRIQALLKKIEFLEAQIEVSKEIFKNR
Ga0209198_1009943103300025640Pelagic MarineMGINYSTETSKSIIEEYEFRIQALLKKIEFLEAQIEVSKEIFKNR
Ga0208643_1001069173300025645AqueousMGINYSTETSKTIIEEYEFRIEALLKKIEFLEAQIEVSKEFFKYR
Ga0208643_103813323300025645AqueousMGINYSTETSKSIIDEYEFRIQALLKKIEFLEAQIEVSKEIFKNR
Ga0209199_100146533300025809Pelagic MarineMVGINFSQETARSVIEQYEFRVDALLKKIDFLEAKLEVSKQIFKNR
Ga0209307_112900113300025832Pelagic MarineSKINFIKFRLMGINYSTETSKSIIEEYEFRIEALLKKIEFLEAQIEVSKEIFKNR
Ga0209307_113093743300025832Pelagic MarineLQKIRDSKINFIKFRLMGINYSTETSKSIIEEYEFRIEALLKKIEFLEAQLEVSKEIFKN
Ga0209666_112682733300025870MarineMGINYSTETSKTIIEEYEFRIEALLKKIEFLEAQIEVSKQIFKYR
Ga0208544_1026637323300025887AqueousMGINYSTETSKSIIEEYEFRIQALLKKIEFLEAQIEVSKEFFKNR
Ga0228644_104870943300026453SeawaterDSKINFIKFRLMGINYSTETSKSIIEEYEFRIKALLKKIEFLEAQLEVSNQIK
Ga0247604_112223723300026460SeawaterMGINYSTETSKSIIEEYEFRIKALLKKIEFLEAQIEVSKEFFKYR
Ga0247599_109171913300026470SeawaterMVGINFSQETTSSTVQQYEFRIEALLKKIEFLEAQLEVSNQIK
Ga0247592_108908923300026500SeawaterMGINYSTETSKSIIEEYEFRIEALLKKIEFLEAQIEVSKEFFKYR
Ga0228604_107378323300026506SeawaterKIRDSKINFIKFGLMGINYSTETSKSIIEEYEFRIKALLKKIEFLEAQLEVSNQFK
Ga0208020_106592123300027159EstuarineMVGINFSQETARSVIEQYEFRVGALLKKIEFLEAQLEVSKQIFKNR
Ga0208304_1025974613300027751EstuarineVGINFSQQTTSSTVQQYEFRIEALLKKIEFLEAQIEVSKQIFKYR
Ga0208671_1035681323300027757EstuarineMVGINFSQQTTSSTVQQYEFRIEALLKKIEFLEAQIEVSKQIFKYR
Ga0228648_102833143300028126SeawaterMVGINFSKQTTSSTVQQYEFRIEALLKKIEFLEAQIEVSKEFFKYR
Ga0228648_104942333300028126SeawaterLLMGVNYSQETTKSVVEQYEFRIDALLKRIEFLEAQIEVSKEFFKYR
Ga0228606_117050833300028135SeawaterMVGINFSQETTSSTVQQYEFRIEALLKKIEFLEAQIEVSKEF
Ga0228646_103447353300028280SeawaterMGINYSTETSKSIIEEYEFRIKALLKKIEFLEAQLEVSKQFK
Ga0247583_110501423300028336SeawaterMGINYSTETSKSIIEEYEYRINALLKKIEFLEAQLEVLNKFK
Ga0315321_1004697473300032088SeawaterMVRINFSQETTSSLTEQYEFRIDALLKNIECLEAQLEIVNNKMNIE
Ga0316205_1034942123300032257Microbial MatMVRINFSQQTTSSVTEQYEFRIDALLKNIECLEAQLEIVNNKMNIE
Ga0316202_1052642333300032277Microbial MatMGINYSTETSKSIIDEYEFRIQALLKKIEFLEAQIEVSKEI


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