NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209138_1012054

Scaffold Ga0209138_1012054


Overview

Basic Information
Taxon OID3300025617 Open in IMG/M
Scaffold IDGa0209138_1012054 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4492
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (29.41%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019651Metagenome / Metatranscriptome228Y
F033962Metagenome / Metatranscriptome176N
F066136Metagenome / Metatranscriptome127N
F067130Metagenome / Metatranscriptome126N
F080236Metagenome / Metatranscriptome115N
F090610Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209138_10120541F066136N/AMNKIKTLLLLLLLQSCYIEDILEQDVYVIPETMCDCVYYDTELYRWQKIKLRPGQQSFGWLSYSRKDYCEQVMQGYLIN
Ga0209138_101205410F019651N/AMTTLEKFQELAKINFVQSPSDADVELGELQTADGYELFYITQDVQNLNYENEVFYYKPEFDSIMDEIKNATVFKPSESTTNVCVYDIEDWFDEYYMLDYIQDNMDEDEFEAFTNE
Ga0209138_101205413F033962N/AMTMTELKQYMIENKRVKVAQWNKERAGNYCGPFTAKEFNQSMAIEKVKSRTRRTHSKGNLWSFNNTKDRERFTK
Ga0209138_101205416F067130N/AMQIEIDTTDLQNTLEQLYDRKVKLIAYATADGLDTLVLEGHEEDLFNFYLESFNPFPEWTETDVVRSEFFAHILTK
Ga0209138_101205417F080236N/AMNNIYDKKFELYLVKKGFNLDTISLQECLTQMKLWKKNTVDA
Ga0209138_10120549F090610GGAMNLKHLLMNKPWRLYLIDNKSLTEISKMLNITKSKLKNEYGLK
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Institute for Fundamental Biomedical Research
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