NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207747_1000200

Scaffold Ga0207747_1000200


Overview

Basic Information
Taxon OID3300025534 Open in IMG/M
Scaffold IDGa0207747_1000200 Open in IMG/M
Source Dataset NameHigh solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-1-D (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)75162
Total Scaffold Genes106 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)86 (81.13%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Source Dataset Sampling Location
Location NameJoint BioEnergy Institute, California, USA
CoordinatesLat. (o)38.5402Long. (o)-121.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038199Metagenome166Y
F063614Metagenome / Metatranscriptome129Y
F087072Metagenome / Metatranscriptome110Y
F091897Metagenome / Metatranscriptome107Y
F099151Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0207747_10002002F087072AGGAGMKATVFTKRIFSLELTEEELGIIAGALYFANNEDIKYFVDKYKYPCSGYSFDEVAELQEKLSEEVNKLIENR
Ga0207747_100020036F091897AGGAGMIGSSIPTFLNMQYRCCECGRNLGDKYSRLKGKKQPDVNIIKGKLYCNKCADKHWND
Ga0207747_100020046F038199GAGGMIQYTQAEFLQLLQQYNSTDRSIIKANLKRIMDIYNIKPADIISLGYSHRNVYAWTNKSTKNIPLFEQALYISTRFNFSITEFIK
Ga0207747_100020054F063614AGGAGGMTYTRLRITIDTLVKTGLEKVNVLGVEESQDDLWQIHELCNELMAFWDSELTEERIDELEEIIAELPLLQRV
Ga0207747_100020075F099151N/AMRFREEIYKENGEIIKKFYIDDKEVTQDVYYNLTDELYENTKLKQEEHNDEICDCEECQYFLELINEIRNSSDKEALEILKSEIDFRVQEAYIEGQHVLANELGNSLLKHAVKLEDELDDLYENGSLNEYNEDS
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