Scaffold Ga0207869_1004571

Overview

Basic Information

• Taxon OID: 3300025517
• Scaffold ID: Ga0207869_1004571
• Source Dataset Name: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-5-D (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4032
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Source Dataset Sampling Location

• Location Name: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020484	Metagenome / Metatranscriptome	223	Y
F086518	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207869_10045711	F086518	GAG	VDGCFELNKVRAIYKPRKPPVEGEAEPPQKRAGPAGPMGLGRPAYPFSGSPRSHLWRVDSSHLLEFLSFTIAPLWTLLSWRYLRGKDRIGNPSLNLHLLCLIPKYLDLIFVGLVLWALLEDGCA
Ga0207869_10045715	F020484	AGGA	MARTLDVARSEIRRDRLQRWDKMDTTLLFGINFGRIRTRWKEKFVHFAMEQCFSICSVLEIKIKIHEDEAAMGQRGIEGGDDDVKQ