NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208356_1000003

Scaffold Ga0208356_1000003


Overview

Basic Information
Taxon OID3300025504 Open in IMG/M
Scaffold IDGa0208356_1000003 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)183985
Total Scaffold Genes215 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)138 (64.19%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002483Metagenome / Metatranscriptome555Y
F007832Metagenome / Metatranscriptome344Y
F009274Metagenome / Metatranscriptome320Y
F069061Metagenome / Metatranscriptome124Y
F098275Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0208356_1000003130F002483N/AMATRIFRRRGARGRPAPRPVRASSYYLVAGIPLDREMERLRALPAFAAGPLATRAPELKVRRAGRRPNRLGFAVPSEFRLSVTAYPGIRPGDVLETLLHELAHLHVGRAAEAHAWHGRTFKTILARAMEEAYGVVVSPLPSTLHGAYAEAIERLVRTQW
Ga0208356_1000003159F007832N/AVLVVLSDIFPGGGGPLADVFAIAIAVALFALLYWAIDLIDRI
Ga0208356_1000003214F098275GAGMPFRFNTLLEPGHEAEWAQLGAEKRRALTPAPDTPVGELLRRGQSLSAQAAGLLRAVERGGGSTRA
Ga0208356_100000391F069061N/AMVFDFRHKNISGQWKSSGHRKGDTRDAAFAALEAKVGPLPSGKYMSRPRDGRTKNWDLFTRP
Ga0208356_100000396F009274GAGMPLWITRRAVPAVWRRIPWKMVWTVVVWLGSKGKERVSENLTQREQSEFWSLLKKSKGRPGALSQRDRTRIKNITGKAIRGS
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