NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F098275

Metagenome / Metatranscriptome Family F098275

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F098275
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 67 residues
Representative Sequence MSTTPRKTLLEPGHEAEWAELNEEKRRALTPPPDTPIGELLRRGQHLSAQAAGLLRAVERANGRSRS
Number of Associated Samples 93
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 49.04 %
% of genes near scaffold ends (potentially truncated) 21.15 %
% of genes from short scaffolds (< 2000 bps) 56.73 %
Associated GOLD sequencing projects 79
AlphaFold2 3D model prediction Yes
3D model pTM-score0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (91.346 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil
(13.462 % of family members)
Environment Ontology (ENVO) Unclassified
(25.962 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(53.846 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 46.32%    β-sheet: 0.00%    Coil/Unstructured: 53.68%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.60
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF08843AbiEii 14.42
PF01850PIN 5.77
PF02803Thiolase_C 5.77
PF00440TetR_N 3.85
PF02771Acyl-CoA_dh_N 3.85
PF02580Tyr_Deacylase 3.85
PF13561adh_short_C2 2.88
PF14659Phage_int_SAM_3 2.88
PF01436NHL 1.92
PF10017Methyltransf_33 1.92
PF02604PhdYeFM_antitox 1.92
PF02875Mur_ligase_C 0.96
PF07885Ion_trans_2 0.96
PF02452PemK_toxin 0.96
PF13738Pyr_redox_3 0.96
PF09339HTH_IclR 0.96
PF00441Acyl-CoA_dh_1 0.96
PF01391Collagen 0.96
PF07963N_methyl 0.96
PF13023HD_3 0.96
PF12867DinB_2 0.96
PF01935DUF87 0.96
PF07366SnoaL 0.96
PF00950ABC-3 0.96
PF00112Peptidase_C1 0.96
PF13411MerR_1 0.96
PF00466Ribosomal_L10 0.96
PF13546DDE_5 0.96
PF10049DUF2283 0.96
PF00589Phage_integrase 0.96
PF13784Fic_N 0.96
PF01566Nramp 0.96
PF05199GMC_oxred_C 0.96
PF06527TniQ 0.96
PF02469Fasciclin 0.96
PF07411DUF1508 0.96
PF04075F420H2_quin_red 0.96
PF13635DUF4143 0.96
PF00501AMP-binding 0.96
PF13338AbiEi_4 0.96
PF00704Glyco_hydro_18 0.96
PF00106adh_short 0.96
PF01434Peptidase_M41 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG2253Predicted nucleotidyltransferase component of viral defense systemDefense mechanisms [V] 14.42
COG0183Acetyl-CoA acetyltransferaseLipid transport and metabolism [I] 5.77
COG1960Acyl-CoA dehydrogenase related to the alkylation response protein AidBLipid transport and metabolism [I] 4.81
COG1490D-aminoacyl-tRNA deacylaseTranslation, ribosomal structure and biogenesis [J] 3.85
COG2161Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM familyDefense mechanisms [V] 1.92
COG4118Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressorDefense mechanisms [V] 1.92
COG0244Ribosomal protein L10Translation, ribosomal structure and biogenesis [J] 0.96
COG0465ATP-dependent Zn proteasesPosttranslational modification, protein turnover, chaperones [O] 0.96
COG0609ABC-type Fe3+-siderophore transport system, permease componentInorganic ion transport and metabolism [P] 0.96
COG1108ABC-type Mn2+/Zn2+ transport system, permease componentInorganic ion transport and metabolism [P] 0.96
COG1914Mn2+ or Fe2+ transporter, NRAMP familyInorganic ion transport and metabolism [P] 0.96
COG2303Choline dehydrogenase or related flavoproteinLipid transport and metabolism [I] 0.96
COG2335Uncaracterized surface protein containing fasciclin (FAS1) repeatsGeneral function prediction only [R] 0.96
COG2337mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin moduleDefense mechanisms [V] 0.96
COG3422Uncharacterized conserved protein YegP, UPF0339 familyFunction unknown [S] 0.96
COG4606ABC-type enterochelin transport system, permease componentInorganic ion transport and metabolism [P] 0.96

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms91.35 %
UnclassifiedrootN/A8.65 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001405|JGI20186J14852_1000188All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia4708Open in IMG/M
3300001977|JGI24746J21847_1000326All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei6837Open in IMG/M
3300002568|C688J35102_118365002Not Available552Open in IMG/M
3300003992|Ga0055470_10062337All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia849Open in IMG/M
3300003992|Ga0055470_10114187All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia680Open in IMG/M
3300003997|Ga0055466_10001700All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3023Open in IMG/M
3300004005|Ga0055448_10029619All Organisms → cellular organisms → Bacteria1886Open in IMG/M
3300004055|Ga0055480_10092856All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1198Open in IMG/M
3300004061|Ga0055487_10000148All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria6314Open in IMG/M
3300004071|Ga0055486_10006020All Organisms → cellular organisms → Bacteria1652Open in IMG/M
3300004092|Ga0062389_100915762All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1060Open in IMG/M
3300004153|Ga0063455_100243426All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium934Open in IMG/M
3300005330|Ga0070690_100538378All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium879Open in IMG/M
3300005335|Ga0070666_10027170All Organisms → cellular organisms → Bacteria3746Open in IMG/M
3300005335|Ga0070666_10090825All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2098Open in IMG/M
3300005367|Ga0070667_100076757All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2853Open in IMG/M
3300005367|Ga0070667_101222418All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia703Open in IMG/M
3300005455|Ga0070663_100456404All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1054Open in IMG/M
3300005834|Ga0068851_10012563All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei3994Open in IMG/M
3300006237|Ga0097621_100915480All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia817Open in IMG/M
3300006358|Ga0068871_100720209All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia915Open in IMG/M
3300006581|Ga0074048_10235704All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium891Open in IMG/M
3300006581|Ga0074048_12979050All Organisms → cellular organisms → Bacteria712Open in IMG/M
3300006954|Ga0079219_10005014All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales3977Open in IMG/M
3300007614|Ga0102946_1000245All Organisms → cellular organisms → Bacteria19106Open in IMG/M
3300007614|Ga0102946_1182997All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria739Open in IMG/M
3300007982|Ga0102924_1002612All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales19507Open in IMG/M
3300009029|Ga0066793_10007394All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales5659Open in IMG/M
3300009147|Ga0114129_11350042All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia881Open in IMG/M
3300009520|Ga0116214_1099787All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1067Open in IMG/M
3300009522|Ga0116218_1053544All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1830Open in IMG/M
3300009523|Ga0116221_1256282All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia756Open in IMG/M
3300009525|Ga0116220_10011999All Organisms → cellular organisms → Bacteria3439Open in IMG/M
3300009672|Ga0116215_1076582All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1506Open in IMG/M
3300009700|Ga0116217_10169938All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei1446Open in IMG/M
3300009824|Ga0116219_10626894Not Available590Open in IMG/M
3300009840|Ga0126313_10718346All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia810Open in IMG/M
3300010379|Ga0136449_100307382Not Available2884Open in IMG/M
3300010379|Ga0136449_102399144All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia761Open in IMG/M
3300012043|Ga0136631_10000582All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium11373Open in IMG/M
3300012212|Ga0150985_120718841All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia786Open in IMG/M
3300012960|Ga0164301_10352681All Organisms → cellular organisms → Bacteria1012Open in IMG/M
3300012989|Ga0164305_10293670All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium1197Open in IMG/M
3300013768|Ga0120155_1154662Not Available620Open in IMG/M
3300014301|Ga0075323_1077930Not Available685Open in IMG/M
3300014501|Ga0182024_10088549All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4570Open in IMG/M
3300014501|Ga0182024_12268854Not Available592Open in IMG/M
3300014968|Ga0157379_10089384All Organisms → cellular organisms → Bacteria2763Open in IMG/M
3300015197|Ga0167638_1003730All Organisms → cellular organisms → Bacteria3508Open in IMG/M
3300017792|Ga0163161_10172873All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1653Open in IMG/M
3300018042|Ga0187871_10531064All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria651Open in IMG/M
3300018469|Ga0190270_10289410All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1452Open in IMG/M
3300018476|Ga0190274_10819585All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia990Open in IMG/M
3300019881|Ga0193707_1008042All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales3609Open in IMG/M
3300020005|Ga0193697_1006894All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2770Open in IMG/M
3300020610|Ga0154015_1351614Not Available544Open in IMG/M
3300021178|Ga0210408_10000098All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales135361Open in IMG/M
3300021180|Ga0210396_10001289All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales27859Open in IMG/M
3300021402|Ga0210385_10037656All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales3169Open in IMG/M
3300021432|Ga0210384_10382963All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1267Open in IMG/M
3300021432|Ga0210384_10903696All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium783Open in IMG/M
3300021477|Ga0210398_10000281All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales61692Open in IMG/M
3300021479|Ga0210410_11608076All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium543Open in IMG/M
3300022557|Ga0212123_10023719All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei6742Open in IMG/M
3300023268|Ga0247765_1007367All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2867Open in IMG/M
3300025386|Ga0208585_1009522All Organisms → cellular organisms → Bacteria1025Open in IMG/M
3300025504|Ga0208356_1000003All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia183985Open in IMG/M
3300025537|Ga0210061_1001187All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia4038Open in IMG/M
3300025581|Ga0208355_1007566All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales3836Open in IMG/M
3300025593|Ga0210096_1022923All Organisms → cellular organisms → Bacteria1800Open in IMG/M
3300025625|Ga0208219_1098832All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia666Open in IMG/M
3300025703|Ga0208357_1023231All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2318Open in IMG/M
3300025780|Ga0210100_1001404All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2395Open in IMG/M
3300025903|Ga0207680_10004119All Organisms → cellular organisms → Bacteria6876Open in IMG/M
3300025946|Ga0210126_100071All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria8390Open in IMG/M
3300025947|Ga0210067_1003946All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1746Open in IMG/M
3300025947|Ga0210067_1069468All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium515Open in IMG/M
3300026067|Ga0207678_10438309All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1135Open in IMG/M
3300026135|Ga0209939_1000256All Organisms → cellular organisms → Bacteria9234Open in IMG/M
3300026223|Ga0209840_1140632All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria510Open in IMG/M
3300027696|Ga0208696_1134245All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia807Open in IMG/M
3300027775|Ga0209177_10001687All Organisms → cellular organisms → Bacteria3964Open in IMG/M
3300027854|Ga0209517_10097111All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei1996Open in IMG/M
3300027905|Ga0209415_10044919All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria5852Open in IMG/M
3300028720|Ga0307317_10136794Not Available820Open in IMG/M
3300028802|Ga0307503_10000081All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria56181Open in IMG/M
3300029636|Ga0222749_10364763All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia759Open in IMG/M
3300029999|Ga0311339_10488350All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1256Open in IMG/M
3300030618|Ga0311354_10515729Not Available1178Open in IMG/M
3300031184|Ga0307499_10000800All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria10225Open in IMG/M
3300031228|Ga0299914_10000075All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia55506Open in IMG/M
3300031229|Ga0299913_10295110All Organisms → cellular organisms → Bacteria1607Open in IMG/M
3300031455|Ga0307505_10252093All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia821Open in IMG/M
3300031576|Ga0247727_10563782All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia866Open in IMG/M
3300031670|Ga0307374_10132332All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia2009Open in IMG/M
3300031671|Ga0307372_10050431All Organisms → cellular organisms → Bacteria4011Open in IMG/M
3300031708|Ga0310686_102318238All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales8616Open in IMG/M
3300031708|Ga0310686_112174511All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1180Open in IMG/M
3300031715|Ga0307476_11183616All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia560Open in IMG/M
3300032160|Ga0311301_10000549All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales141412Open in IMG/M
3300032160|Ga0311301_10447337All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1948Open in IMG/M
3300032515|Ga0348332_13979985All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium549Open in IMG/M
3300033888|Ga0334792_016555All Organisms → cellular organisms → Bacteria2719Open in IMG/M
3300034282|Ga0370492_0017332All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia2956Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil13.46%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands12.50%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil11.54%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil7.69%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil5.77%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere4.81%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.88%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring1.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.92%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil1.92%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost1.92%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.92%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil1.92%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa1.92%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere1.92%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.92%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.96%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.96%
Polar Desert SandEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand0.96%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.96%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.96%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.96%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost0.96%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.96%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.96%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.96%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.96%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil0.96%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.96%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.96%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.96%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.96%
BiofilmEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm0.96%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.96%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.96%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.96%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.96%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.96%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.96%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001405Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012EnvironmentalOpen in IMG/M
3300001977Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5Host-AssociatedOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300003992Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D1EnvironmentalOpen in IMG/M
3300003997Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1EnvironmentalOpen in IMG/M
3300004005Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWA_D2EnvironmentalOpen in IMG/M
3300004055Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWB_D2EnvironmentalOpen in IMG/M
3300004061Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqC_D2EnvironmentalOpen in IMG/M
3300004071Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqB_D2EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004153Grasslands soil microbial communities from Hopland, California, USA (version 2)EnvironmentalOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005455Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaGHost-AssociatedOpen in IMG/M
3300005834Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2Host-AssociatedOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006581Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300007614Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_D1_MGEnvironmentalOpen in IMG/M
3300007982Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaGEnvironmentalOpen in IMG/M
3300009029Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009520Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaGEnvironmentalOpen in IMG/M
3300009522Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaGEnvironmentalOpen in IMG/M
3300009523Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaGEnvironmentalOpen in IMG/M
3300009525Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaGEnvironmentalOpen in IMG/M
3300009672Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaGEnvironmentalOpen in IMG/M
3300009700Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaGEnvironmentalOpen in IMG/M
3300009824Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaGEnvironmentalOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300012043Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ601 (22.06)EnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013768Permafrost microbial communities from Nunavut, Canada - A35_65cm_0MEnvironmentalOpen in IMG/M
3300014301Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D1EnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015197Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6B, Proglacial plain, adjacent to northern proglacial tributary)EnvironmentalOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300018042Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10EnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300019881Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2EnvironmentalOpen in IMG/M
3300020005Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2EnvironmentalOpen in IMG/M
3300020610Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300023268Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L106-311C-6EnvironmentalOpen in IMG/M
3300025386Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025504Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025537Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300025581Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025593Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWA_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025625Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025703Arctic peat soil from Barrow, Alaska - NGEE Surface sample F52-2 deep-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025780Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025946Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025947Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqB_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300026067Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026135Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_D1_MG (SPAdes)EnvironmentalOpen in IMG/M
3300026223Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190 (SPAdes)EnvironmentalOpen in IMG/M
3300027696Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027775Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)EnvironmentalOpen in IMG/M
3300027854Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300028720Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357EnvironmentalOpen in IMG/M
3300028802Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_SEnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300029999I_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030618II_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300031184Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_SEnvironmentalOpen in IMG/M
3300031228Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57EnvironmentalOpen in IMG/M
3300031229Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38EnvironmentalOpen in IMG/M
3300031455Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_SEnvironmentalOpen in IMG/M
3300031576Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25EnvironmentalOpen in IMG/M
3300031670Soil microbial communities from Risofladan, Vaasa, Finland - OX-3EnvironmentalOpen in IMG/M
3300031671Soil microbial communities from Risofladan, Vaasa, Finland - OX-1EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M
3300033888Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1EnvironmentalOpen in IMG/M
3300034282Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI20186J14852_100018833300001405Arctic Peat SoilMPFRFNTLLEPGHEAEWAQLGAEKRRALTPAPDTPVGELLRRGQSLSAQAAGLLRAVERGGGSTRA*
JGI24746J21847_100032653300001977Corn, Switchgrass And Miscanthus RhizosphereVAAQPKRRPLLAPGNEAEWARLNAEKRRALTPPPGTPIGELLRRGQQLSSQGAKLLRAVERADGPSGS*
C688J35102_11836500223300002568SoilMASRPRTLLEPGHEAEWARLNAEKRKALTPPPGTPIGELLRRGQALSAQANGLLRAVDRANEHPRP*
Ga0055470_1006233713300003992Natural And Restored WetlandsMSAGNDAEWARLNAEKRDALTPAPDTPIGELLRRGQHLSAQGAKLLRAVERADGHRGS*
Ga0055470_1011418713300003992Natural And Restored WetlandsMAAQSKRRSLMSAGNEAEWARLNAEKRDALTPPPDTPIGELLRRGQHLSAQGAKLLRAVERADGHRGS*
Ga0055466_1000170023300003997Natural And Restored WetlandsMATRPHTLLEPGHEAEWARLNAEKREALTPPPGTPIGELLRRGQHLSSQAGLLRAVERGDERSRS*
Ga0055448_1002961923300004005Natural And Restored WetlandsMAAQPKKRPLMAPGNEAEWTRINEEKREALTPPPGTPIGVLLRRGQRLSAQGAKLLRAVERADGHSRS*
Ga0055480_1009285633300004055Natural And Restored WetlandsMAAQPKKRPLMAPGNEAEWTRINEEKREALTPPPGTPIGVLLRRGQHLSAQGAKLLRAVERADGDSRP*
Ga0055487_1000014863300004061Natural And Restored WetlandsMGTHPRKTLLEPGHEAEWERLNAEKSRVLTPAPDTPIGELLRRGQHLSAQAAGLLRAVERAGVDETARS*
Ga0055486_1000602023300004071Natural And Restored WetlandsMASRPRTLLESGHEAEWARLNAEKRKALTPPPDTPIGELLRRGQALSSQATGLLRAVDHANEHPRP*
Ga0062389_10091576223300004092Bog Forest SoilMRTRPRNTLLEPGHEAEWAKLNEEKRHALMPPANTPVAELLRRGQHLSAQAAWLLRAVERADDRARP*
Ga0063455_10024342623300004153SoilMSSSPRRTLLEPGHEAEWKRLDAEKRKALTPPPGTPIAELLRRGQHLSAQASGLLR
Ga0070690_10053837843300005330Switchgrass RhizosphereMPSSPRKTLMEPGHDADWTRLAVEKRRALTPPPDTPIGQLLRQGQDLSAQAVALLRAVERGGGSTR
Ga0070666_1002717053300005335Switchgrass RhizosphereMATQPRKTLLEPGHEAEWAELNREKREALTPPPDTPIGELLRRGQHLSAQAAKLLRAVERGNGGSRS*
Ga0070666_1009082523300005335Switchgrass RhizosphereMPSSPRKTLMEPGHDADWTRLAVEKRRALTPPPDTPIGQLLRQGQDLSAQAVALLRAVERGGGSTRT*
Ga0070667_10007675723300005367Switchgrass RhizosphereMSRSPRTLLEPGHEAEWKQLGAEKRELLTPPSDTPIGELLRRGQHLSAQAARLLRAVDRGNGLARS*
Ga0070667_10122241823300005367Switchgrass RhizosphereMASRPRTLLEPGHEAEWARLNAEKRKALTPPPDTPIGELLRRGQALSAQATGLLRAVDRANEHPKP*
Ga0070663_10045640433300005455Corn RhizosphereMGTSSPRTLMEPGHDAEWASLAAEKRRALTPAPDTPIGQLLRRGQDLSAQAVALLRAVERGGGSTRA*
Ga0068851_1001256373300005834Corn RhizosphereLIEPGHDAEWIRLEAEKRSALTPALETPVGELLRRGQNLSSQAGALLRAVERGGGSTRA*
Ga0097621_10091548013300006237Miscanthus RhizosphereSIQAMSRSAGTLLEPGHEAEWKRLGAEKRALLTPPPETPIGELLRRGQHLSAQAARLLRAVDRGNGLARS*
Ga0068871_10072020923300006358Miscanthus RhizosphereTLLEPGHEAEWKQLGAEKRELLTPPPDTPIGELLRRGQHLSAQAARLLRAVDRGNGLARS
Ga0074048_1023570433300006581SoilMSDPARKTLLEPGHKAEWAELNREKREALTPAPDTPIGELLRRGQHLSAQAAGLLRAVERGSDGAPRP*
Ga0074048_1297905023300006581SoilMASDRRTLLEPGHEAEWARLNAEKREFLTPPPDTAIGELLRRGQVLSSQAAGLLQAVDRANGRPQS*
Ga0079219_1000501443300006954Agricultural SoilMAVQPQPKNNSLLAPGHDEEWVKLNAEKRRALTPPADTPIGELLRRGQHLSAQGTKLLRAIAIERANGNRQS*
Ga0102946_1000245143300007614SoilMAARSEKQPLMAPGNEAEWARLNAEKREALTPPPDTPIGELLRRGQHLSAQGANLQRAVERANGDRRS*
Ga0102946_118299723300007614SoilMATRPRDKPLLAPGNEAEWARLNAEKREALRPPPDTPIGELLRRGQHLSAQGAKLLRAVERANGDRRS*
Ga0102924_1002612133300007982Iron-Sulfur Acid SpringMEYNMTMGVHPRATLFEPGHEAEWAALNEEKRRALTPPPDTPVGELLRRGQHLSAQAAKLLQAVEQADGRPRP*
Ga0066793_1000739473300009029Prmafrost SoilMETPSHTLLEPGHRAAWARLNTEKRQLLTPPPDTPIGELLRRGQRLSAQAAGLLRAIERAGGNARS*
Ga0114129_1135004223300009147Populus RhizosphereMAPKRRTLIEPGHEAEWARLNAEKRQALTPPPDTPIGELLRRGQHLSAQAAGLLRAIDRADERSRS*
Ga0116214_109978713300009520Peatlands SoilMNTRPRTLLEPGHEAEWAVLNEEKRRALTPPADTPVEELLRQGQHLSRQAFMLLRAVERAENERT
Ga0116218_105354423300009522Peatlands SoilMGVHPRATLFEPGHEAEWAALNEEKRRALTPPPDTPVGELLRRGQHLSAQAAKLLQAVEQADGRPRP*
Ga0116221_125628223300009523Peatlands SoilMNTRPRTLLEPGHEAEWAVLNEEKRRALTPPADTPVEELLRQGQHLSRQAFMLLRAVERAENERSARPA*
Ga0116220_1001199953300009525Peatlands SoilMNTRPRTLLEPGHEAEWAVLNEEKRRALTPPADTPVEELLRQGQHLSRQAFMLLRAVERAENERTARPA*
Ga0116215_107658223300009672Peatlands SoilMEYNTTMGVHPRATLFEPGHEAEWAALNEEKRRALTPPPDTPVGELLRRGQHLSAQAAKLLQAVEQADGRPRP*
Ga0116217_1016993833300009700Peatlands SoilMETMSTRPRKTLLEPGHEAEWAELNKEKRSALTPSADTPVGELLRRGQHLSA
Ga0116219_1062689413300009824Peatlands SoilMETMSTRPRKTLLEPGHEAEWAEFNKEKRSALTPSADTPVGELLRRGQHLSAQAAWL
Ga0126313_1071834623300009840Serpentine SoilMPSSSRKTLMEPGHEAEWARLAAEKRRALTPGPDTPIGQLLRRGQDLSAQAVGLLRAVERGGGSTRA*
Ga0136449_10030738233300010379Peatlands SoilMATPAKTPLLSPDHEAEWAVLNEEKRRALTPPADTPVSELLRRGQHLSAQAAWLLRAVERADARPQS*
Ga0136449_10239914413300010379Peatlands SoilMGDRPRKTLLEPGHEAEWAALNKEKRRALTPPPDTPVAELLRRGQHLSAQAAKLLRAVDRADGRPRS*
Ga0136631_10000582103300012043Polar Desert SandLLEVGHQDEWVRLEAEKRVALTPPPDTPIGELLRRGQHLSAQAAMLRRAVSSADERAPA*
Ga0150985_12071884113300012212Avena Fatua RhizosphereGTMLEPGHEAEWKQLGAEKRALLTPPPDTPIGELLRRGQHLSAQAARLLRAVDRGNGLTARP*
Ga0164301_1035268123300012960SoilMAAHSRKTLLEPGHEDEWRRLNAEQREALKPAPDTPIGELLRRGQHLSSQAAGLLRAVERADDRPRS*
Ga0164305_1029367013300012989SoilLEPGHEAEWKRLNAEKRKALTPPPETPIAELLRRGQHLSAQASGLLRAVERAGGHPR
Ga0120155_115466223300013768PermafrostMSASSPKTLIEPGHAEAWARLASEKRRLLTPPPDAPIGELLRRGQRLSAQAAALLRAVERANERTRP*
Ga0075323_107793023300014301Natural And Restored WetlandsMLRTFMSDRRKIQTMASHHRTLLEPGHEAEWAQLNAEKRERLTPPPDTPIGELLRRGQELSAQASGLLQAVERASGKPQS*
Ga0182024_1008854913300014501PermafrostMSTRPRTLLEPGHEAEWAELNEEKRRALTPPADTPVEELLRQGQHLSAQAAWLLRAVEQANGNART*
Ga0182024_1226885413300014501PermafrostMKRRKRTTPLLSVGHEAEWAILNEEKRRALTPGADTPVEELLRQGQHLSAQAAWLLRAVEQANGHAAP*
Ga0157379_1008938443300014968Switchgrass RhizosphereMTTRPRKTLFEPGHEDEWRRLNAEKSRVLTPAPEIPIGELLRRGQHLSAQAAALLRAIERADERARS*
Ga0167638_100373043300015197Glacier Forefield SoilMPFRFNTLLEPGHEAEWAQLGAEKRRALTPAPDTPVGELLRRGQGLSAQAAGLLRAVERGGGSTRA*
Ga0163161_1017287333300017792Switchgrass RhizosphereMSGSPRTLLEPGHEAEWKQLGAEKRELLTPPSDTPIGELLRRGQHLSAQAARLLRAVDRGNGLARS
Ga0187871_1053106423300018042PeatlandMSSRNGTATLLSVGHEAEWAVLNEEKRRTLTPPADTPIEELLRRGQHLSAQAAWLLRGVEQANGHDARTAAGDGARP
Ga0190270_1028941023300018469SoilMVSMPSSPRRTLMEPGHDAEWARLAAEKRSALTPPPDTPIGQLLRRGQDLSAQAVGLLRAVERGGGSTRA
Ga0190274_1081958533300018476SoilMQMASQAHPRRTLIEPGHETEWARLNAEKREYLTPSPDTPVGELLRRGQHLSAQAAKLLRAVDRANGGPRA
Ga0193707_100804253300019881SoilMASHHRTLLEPGHEAEWARLNAEKRKLLTPPPDTAIGELLRRGQELSSQAAGLLQAVDRANDRPQS
Ga0193697_100689423300020005SoilMAAQPKKKPLLAPGHEKEWAELNAEKRRALTPPPDTPIGELLRRGQHLSAQGAKLLRAVERADGHRRS
Ga0154015_135161413300020610Corn, Switchgrass And Miscanthus RhizosphereQPRKTLLEPGHEAEWAMLNREKREALAPPPDTPVGELLRRGQHLSAQAAKLLRAVERGNGGSRS
Ga0210408_10000098413300021178SoilMGAAPHKTLLEPGHEAEWAALNEEKRRALTPPPDTPIGELLRRGQHLSAQAAGLLRAVERANGRSRS
Ga0210396_10001289243300021180SoilMSDRVRTLLEPGHEAEWAVLNEEKRRALTPPPDTPVEVLLRQGQQLSRQAWLLLRAVERAKNDRAARPA
Ga0210385_1003765643300021402SoilVSSQAKTPLLSPGHEAEWAALNEEKRRALTPPADTPVSELLRRGQHLSAQAAKLLRAVDKIKS
Ga0210384_1038296333300021432SoilMSTTPRKTLLEPGHEAEWAELNEEKRRALTPPPDTPIGELLRRGQHLSAQAAGLVRAVERANGRARS
Ga0210384_1090369623300021432SoilMVDMSATPRKTLLEPGHEAEWAELNEEKRRALTPPPDTPIGELLRRGQHLSAQAAGLLRAVERANGRSRS
Ga0210398_10000281133300021477SoilMSIHPQTLLEPGHEAEWAALNEEKRRALTPPADTPISELLRRGQHLSAQAAKLLRAVERANGAPRS
Ga0210410_1160807623300021479SoilMSVAPRKTLLEPGHEAEWAELNKEKRRALTPPPDTPIGELLRSGQHLSAQAAGLVRAVERADGRARS
Ga0212123_1002371963300022557Iron-Sulfur Acid SpringMTMGVHPRATLFEPGHEAEWAALNEEKRRALTPPPDTPVGELLRRGQHLSAQAAKLLQAVEQADGRPRP
Ga0247765_100736713300023268Plant LitterRKTLLEPGHDAEWARLDAEKRSALTPAPDMPIGQLLRRGQDLSAQAVGLLRAVERGGGSPRA
Ga0208585_100952223300025386Arctic Peat SoilMAAPARTPLLSPGHEAEWAILNREKRRSLTPSPDTPIGELLKRGQHLSAQAAKLLRAVERANGRSRA
Ga0208356_10000032143300025504Arctic Peat SoilMPFRFNTLLEPGHEAEWAQLGAEKRRALTPAPDTPVGELLRRGQSLSAQAAGLLRAVERGGGSTRA
Ga0210061_100118733300025537Natural And Restored WetlandsMATRPHTLLEPGHEAEWARLNAEKREALTPPPGTPIGELLRRGQHLSSQAGLLRAVERGDERSRS
Ga0208355_100756643300025581Arctic Peat SoilMAVIKRRPITLLEPGHQAEWATLNEEKRHALTPPSGTAVSELLRRGQHLSAQAAGLLRAVERANGRTRS
Ga0210096_102292323300025593Natural And Restored WetlandsMAAQPKKRPLMAPGNEAEWTRINEEKREALTPPPGTPIGVLLRRGQRLSAQGAKLLRAVERADGHSRS
Ga0208219_109883223300025625Arctic Peat SoilRVATPAHTLLEPGHSDEWARLNAEKRRFLTPPPDAPIGELLRRGQHLSAQAAGLLRAIERADGSARS
Ga0208357_102323123300025703Arctic Peat SoilMQAMSTRPRTLLEPGHEAEWAELNEEKRRALTPPADTPVEELLRRGQHLSAQAAWLLRAVERADGRTRS
Ga0210100_100140433300025780Natural And Restored WetlandsMSAGNEAEWARLNAEKRDALTPPPDTPIGELLRRGQHLSAQGAKLLRAVERADGHRGS
Ga0207680_1000411953300025903Switchgrass RhizosphereMATQPRKTLLEPGHEAEWAELNREKREALTPPPDTPIGELLRRGQHLSAQAAKLLRAVERGNGGSRS
Ga0210126_100071123300025946Natural And Restored WetlandsMGTHPRKTLLEPGHEAEWERLNAEKSRVLTPAPDTPIGELLRRGQHLSAQAAGLLRAVERAGVDETARS
Ga0210067_100394613300025947Natural And Restored WetlandsRRTLLEPSHEAEWARLNAEKRKLLTPPPGTAIGELLRRGQELSSQAAGLLRAVDRANDGRQP
Ga0210067_106946823300025947Natural And Restored WetlandsMASRPRTLLESGHEAEWARLNAEKRKALTPPPDTPIGELLRRGQALSSQATGLLRAVDHANEHPRP
Ga0207678_1043830933300026067Corn RhizosphereMGTSSPRTLMEPGHDAEWASLAAEKRRALTPAPDTPIGQLLRRGQDLSAQAVALLRAVERGGGSTRA
Ga0209939_100025663300026135SoilMAPGNEAEWARLNAEKREALTPPPDTPIGELLRRGQHLSAQGANLQRAVERANGDRRS
Ga0209840_114063213300026223SoilMETPSHTLLEPGHRAAWARLNTEKRQLLTPPPDTPIGELLRRGQRLSAQAAGLLRAIERAGGN
Ga0208696_113424513300027696Peatlands SoilERMNTRPRTLLEPGHEAEWAVLNEEKRRALTPPADTPVEELLRQGQHLSRQAFMLLRAVERAENERTARPA
Ga0209177_1000168743300027775Agricultural SoilMAVQPQPKNNSLLAPGHDEEWVKLNAEKRRALTPPADTPIGELLRRGQHLSAQGTKLLRAIAIERANGNRQS
Ga0209517_1009711113300027854Peatlands SoilMETMSTRPRKTLLEPGHEAEWAELNKEKRSALTPSADTPVGELLRRGQHLSAQAAWLLRAVERA
Ga0209415_1004491923300027905Peatlands SoilMSTRPHATLIEPGHEAEWAVLNEEKRRALTPPPETPIAELLRRGQRLSAQAAALLRAVERADGLDPEV
Ga0307317_1013679423300028720SoilMATQPKSRPLMAPGNEAEWARINAEKRAALTPPSDTPIGELLRRGQHLSAQGARLLRAVEKADGRRRS
Ga0307503_10000081323300028802SoilMASRRRTLLEPGHEAEWARLNAEKRKALTPPPDAPIGELLRRGQALSAQANGLLRAVDRANEHPRP
Ga0222749_1036476313300029636SoilMSTTPRKTLLEPGHEAEWAELNEEKRRALTPPPDTPIGELLRRGQHLSAQAAGLLRAVERANGRSRS
Ga0311339_1048835023300029999PalsaMKRRERTTPLLSVGHEAEWAVINEEKRRALTPPPDTPVEELLRQGQHLSAQAAWLLRAVEQANGHARL
Ga0311354_1051572913300030618PalsaMSSRDRTPLLSVGHEAEWAALNDEKRRALTLPADMPVEELLRRGQHLSAQAAWLQSAY
Ga0307499_1000080073300031184SoilMAPGNEAEWAELGAEKRRALTPPPDTPIGELLRRGQHLSAQGAKLLRAVERADGHRRP
Ga0299914_10000075353300031228SoilMAAQPKKTPLIGPGHEAEWAELNAEKRRALTPPPDTPIGELLRRGQHLSAQGAKLLRAVERADGHRRS
Ga0299913_1029511023300031229SoilMSDRTLLRPDAPQWAALNEEKRRLLTPPPDTPVEDLLRQGQELSRQAALLLEAVERADEHGSAGA
Ga0307505_1025209323300031455SoilMSRSAATLLEPGHEAEWKRLGAEKRALLTPPPDTPIGELLRRGQHLSAQAARLLRAVDRGNGRTARP
Ga0247727_1056378223300031576BiofilmRVQGMALVTIARMAARPRTLLEPGHEEEWVRLNAEKRRLLTPPPETPVAELLRRGQHLSAQAAGLLRAVERAGGRTRS
Ga0307374_1013233213300031670SoilEQRRIGARIESMKRRDRTPLLSVGHEAEWAVLNEEKRRVLTPPADTPIEELLRRGQHLSAQAAWLLRAVEQANGHARTKTAR
Ga0307372_1005043163300031671SoilLEQRRIGARIESMKRRDRTPLLSVGHEAEWAVLNEEKRRVLTPPADTPIEELLRRGQHLSAQAAWLLRAVEQANGHARTKTAR
Ga0310686_10231823843300031708SoilLLEPGHEAEWAEFNREKRRALTPPPDTPVEELLQRGQHLSAQAAWLLRAVERANGHAQS
Ga0310686_11217451133300031708SoilMVPSGRTLLEPGHDDEWAALNAEKRRVLAPPADTPVGELLRRGQHLSAQAAKLLRAVERAADGRPGS
Ga0307476_1118361623300031715Hardwood Forest SoilMSTGPRKTLLEPGHEAEWAELDEEKRRALTPPPDTPIGELLRRGQHLSAQAGSLLRAVERADGRSRS
Ga0311301_100005491043300032160Peatlands SoilMNTRPRTLLEPGHEAEWAVLNEEKRRALTPPADTPVEELLRQGQHLSRQAFMLLRAVERAENERTARPA
Ga0311301_1044733713300032160Peatlands SoilMATPAKTPLLSPDHEAEWAVLNEEKRRALTPPADTPVSELLRRGQHLSAQAAWLLRAVERADARPQS
Ga0348332_1397998513300032515Plant LitterWIDTCRRGDGRIERMSPRPRTLLEPGHEAEWAEFNREKRRALTPPPDTPVEELLQRGQHLSAQAAWLLRAVERANGHAQS
Ga0334792_016555_2350_25503300033888SoilMTDRPRTLLEPGHEAEWAELNEEKRRALTPPADTPVGELLRRGQHLSAQAAGLLRAVERANGRPGP
Ga0370492_0017332_1631_18343300034282Untreated Peat SoilMSSRRRSPLMSPGHEAEWAALNEEKRRVLTPGADTPIEELLRRGQHLSAQAAWLLRAVEQANGHAAP

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.