Scaffold Ga0207697_10012893

Overview

Basic Information

• Taxon OID: 3300025315
• Scaffold ID: Ga0207697_10012893
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3495
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025065	Metagenome	203	N
F034607	Metagenome	174	Y
F101512	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207697_100128932	F034607	AGG	MSQKQLRNDLLDRIKDRHFVWWNDSLQLYQMAGLKSAQFGNDVLTVLTYQIVWMLEHYNVDTEIFIEMLRASRKAYQDIDE
Ga0207697_100128935	F101512	AGGAGG	VMAKKRRGRPPKPKPPKPIRVHEHKLRPMIREACRTGMVEAIEHCGNFWTVSDGFKKYIDQQVASQAEALIAAVRAVLRAELSLHEIASRRRRKP
Ga0207697_100128937	F025065	GGGGG	MTPKQHFRRLQLRLEIAEYGMGMPLDRERVKELREQVEQARKEAELDTMTSDGVE