Metagenome Family F101512

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101512
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	87 residues
Representative Sequence	MSKKRRGRPPKPKPPKPIRIREHKLRPMIREACKTGMVEAIEHTSNFWSVTDGYKKYIDHQIAAEAEALMTAVRAVVREELTASKRKRK
Number of Associated Samples	68
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	68.63 %
% of genes near scaffold ends (potentially truncated)	40.20 %
% of genes from short scaffolds (< 2000 bps)	80.39 %
Associated GOLD sequencing projects	58
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (52.941 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (17.647 % of family members)
Environment Ontology (ENVO)	Unclassified (51.961 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (79.412 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.14% β-sheet: 0.00% Coil/Unstructured: 47.86%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF04404	ERF	28.71
PF09588	YqaJ	5.94
PF02831	gpW	1.98
PF05772	NinB	1.98
PF07589	PEP-CTERM	1.98
PF01844	HNH	1.98
PF01520	Amidase_3	0.99
PF00814	TsaD	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0533	tRNA A37 threonylcarbamoyltransferase TsaD	Translation, ribosomal structure and biogenesis [J]	0.99
COG0860	N-acetylmuramoyl-L-alanine amidase	Cell wall/membrane/envelope biogenesis [M]	0.99
COG1214	tRNA A37 threonylcarbamoyladenosine modification protein TsaB	Translation, ribosomal structure and biogenesis [J]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
All Organisms	root	All Organisms	47.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
cellular organisms	root	All Organisms → cellular organisms	45.10 %
Viruses	superkingdom	All Organisms → Viruses	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	44.12 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.96 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	41.18 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.96 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	32.35 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.96 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	29.41 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.96 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.98 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	23.53 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.96 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.98 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	23.53 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.96 %
Skermanella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	0.98 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	23.53 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.96 %
Skermanella rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella rosea	0.98 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	23.53 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.96 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	0.98 %
Skermanella rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella rosea	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	23.53 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.96 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	0.98 %
Skermanella rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella rosea	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	23.53 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.96 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	0.98 %
Skermanella rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella rosea	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	23.53 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.96 %
eudicotyledons	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons	0.98 %
Skermanella rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella rosea	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	23.53 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.96 %
Gunneridae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae	0.98 %
Skermanella rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella rosea	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	23.53 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.96 %
Pentapetalae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae	0.98 %
Skermanella rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella rosea	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	23.53 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.96 %
Caryophyllales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales	0.98 %
Skermanella rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella rosea	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	23.53 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.96 %
Amaranthaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Amaranthaceae	0.98 %
Skermanella rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella rosea	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	23.53 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.96 %
Bosea	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Amaranthaceae → Bosea	0.98 %
Skermanella rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella rosea	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002244\|JGI24742J22300_10009302	All Organisms → cellular organisms → Bacteria → Proteobacteria	1621	Open in IMG/M
3300005093\|Ga0062594_100200771	Not Available	1390	Open in IMG/M
3300005093\|Ga0062594_101238422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	743	Open in IMG/M
3300005093\|Ga0062594_101743639	Not Available	653	Open in IMG/M
3300005290\|Ga0065712_10078436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3339	Open in IMG/M
3300005290\|Ga0065712_10094431	Not Available	2252	Open in IMG/M
3300005290\|Ga0065712_10225743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	965	Open in IMG/M
3300005290\|Ga0065712_10339455	Not Available	793	Open in IMG/M
3300005330\|Ga0070690_100320503	Not Available	1117	Open in IMG/M
3300005331\|Ga0070670_100427382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1172	Open in IMG/M
3300005335\|Ga0070666_10027590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3720	Open in IMG/M
3300005335\|Ga0070666_11298579	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300005335\|Ga0070666_11370539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	528	Open in IMG/M
3300005338\|Ga0068868_100485586	All Organisms → cellular organisms → Bacteria → Proteobacteria	1080	Open in IMG/M
3300005338\|Ga0068868_101030694	Not Available	754	Open in IMG/M
3300005340\|Ga0070689_100052268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella rosea	3160	Open in IMG/M
3300005340\|Ga0070689_100254127	All Organisms → cellular organisms → Bacteria → Proteobacteria	1451	Open in IMG/M
3300005340\|Ga0070689_101525321	Not Available	606	Open in IMG/M
3300005347\|Ga0070668_101566614	Not Available	603	Open in IMG/M
3300005354\|Ga0070675_100163599	Not Available	1915	Open in IMG/M
3300005354\|Ga0070675_100163599	Not Available	1915	Open in IMG/M
3300005355\|Ga0070671_100343541	All Organisms → Viruses → Predicted Viral	1273	Open in IMG/M
3300005365\|Ga0070688_100258403	Not Available	1243	Open in IMG/M
3300005367\|Ga0070667_101412412	Not Available	653	Open in IMG/M
3300005543\|Ga0070672_100332976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1292	Open in IMG/M
3300005543\|Ga0070672_101022322	Not Available	733	Open in IMG/M
3300005548\|Ga0070665_100091612	Not Available	3045	Open in IMG/M
3300005548\|Ga0070665_102262365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	547	Open in IMG/M
3300005617\|Ga0068859_101977546	Not Available	644	Open in IMG/M
3300005618\|Ga0068864_100888494	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300005618\|Ga0068864_101888880	Not Available	603	Open in IMG/M
3300005618\|Ga0068864_102505064	Not Available	522	Open in IMG/M
3300005841\|Ga0068863_101650477	Not Available	650	Open in IMG/M
3300006178\|Ga0075367_10361692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	916	Open in IMG/M
3300006237\|Ga0097621_100853836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	846	Open in IMG/M
3300006871\|Ga0075434_102548387	Not Available	512	Open in IMG/M
3300006904\|Ga0075424_101028246	Not Available	878	Open in IMG/M
3300009094\|Ga0111539_10032638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6322	Open in IMG/M
3300009098\|Ga0105245_13130012	Not Available	513	Open in IMG/M
3300009101\|Ga0105247_10708416	All Organisms → cellular organisms → Bacteria → Proteobacteria	758	Open in IMG/M
3300009156\|Ga0111538_11084045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1013	Open in IMG/M
3300009156\|Ga0111538_11409864	Not Available	879	Open in IMG/M
3300009156\|Ga0111538_11416204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	877	Open in IMG/M
3300009177\|Ga0105248_12576644	Not Available	580	Open in IMG/M
3300009553\|Ga0105249_10062718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3413	Open in IMG/M
3300009553\|Ga0105249_10512072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1246	Open in IMG/M
3300009553\|Ga0105249_10694852	Not Available	1077	Open in IMG/M
3300010397\|Ga0134124_10523159	Not Available	1150	Open in IMG/M
3300012895\|Ga0157309_10067465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	925	Open in IMG/M
3300012899\|Ga0157299_10248653	Not Available	563	Open in IMG/M
3300012899\|Ga0157299_10260842	Not Available	554	Open in IMG/M
3300012903\|Ga0157289_10021457	Not Available	1415	Open in IMG/M
3300012916\|Ga0157310_10387041	Not Available	577	Open in IMG/M
3300014325\|Ga0163163_10053327	Not Available	3991	Open in IMG/M
3300014969\|Ga0157376_10846735	Not Available	930	Open in IMG/M
3300015200\|Ga0173480_10097906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1418	Open in IMG/M
3300017792\|Ga0163161_11313970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	629	Open in IMG/M
3300017792\|Ga0163161_11429223	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300022883\|Ga0247786_1029307	Not Available	1067	Open in IMG/M
3300022886\|Ga0247746_1020005	Not Available	1447	Open in IMG/M
3300022889\|Ga0247785_1046520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	541	Open in IMG/M
3300022899\|Ga0247795_1107421	Not Available	501	Open in IMG/M
3300022901\|Ga0247788_1084429	Not Available	616	Open in IMG/M
3300023062\|Ga0247791_1010885	All Organisms → Viruses → Predicted Viral	1340	Open in IMG/M
3300023069\|Ga0247751_1003667	All Organisms → cellular organisms → Bacteria → Proteobacteria	2067	Open in IMG/M
3300023073\|Ga0247744_1041322	Not Available	732	Open in IMG/M
3300024275\|Ga0247674_1035716	Not Available	590	Open in IMG/M
3300024317\|Ga0247660_1002519	Not Available	2564	Open in IMG/M
3300025290\|Ga0207673_1008892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1277	Open in IMG/M
3300025315\|Ga0207697_10000731	All Organisms → cellular organisms → Bacteria → Proteobacteria	18636	Open in IMG/M
3300025315\|Ga0207697_10012893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3495	Open in IMG/M
3300025315\|Ga0207697_10034005	Not Available	2086	Open in IMG/M
3300025315\|Ga0207697_10083618	Not Available	1347	Open in IMG/M
3300025903\|Ga0207680_10014631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4069	Open in IMG/M
3300025903\|Ga0207680_10970718	Not Available	609	Open in IMG/M
3300025903\|Ga0207680_11234896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	532	Open in IMG/M
3300025918\|Ga0207662_10218694	Not Available	1240	Open in IMG/M
3300025925\|Ga0207650_10030249	Not Available	3899	Open in IMG/M
3300025925\|Ga0207650_10194557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1622	Open in IMG/M
3300025925\|Ga0207650_11257412	Not Available	630	Open in IMG/M
3300025925\|Ga0207650_11365003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	603	Open in IMG/M
3300025926\|Ga0207659_10187228	Not Available	1645	Open in IMG/M
3300025930\|Ga0207701_10433507	Not Available	1130	Open in IMG/M
3300025931\|Ga0207644_10532313	Not Available	971	Open in IMG/M
3300025933\|Ga0207706_10323404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1342	Open in IMG/M
3300025934\|Ga0207686_11556813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	545	Open in IMG/M
3300025936\|Ga0207670_10026545	Not Available	3651	Open in IMG/M
3300025936\|Ga0207670_10029989	Not Available	3471	Open in IMG/M
3300025937\|Ga0207669_11316827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	614	Open in IMG/M
3300025938\|Ga0207704_11429208	Not Available	593	Open in IMG/M
3300025941\|Ga0207711_10170462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1975	Open in IMG/M
3300025941\|Ga0207711_10206264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1795	Open in IMG/M
3300025941\|Ga0207711_10210407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1776	Open in IMG/M
3300025941\|Ga0207711_11501149	Not Available	617	Open in IMG/M
3300025960\|Ga0207651_12016433	Not Available	518	Open in IMG/M
3300025961\|Ga0207712_10064907	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Amaranthaceae → Bosea	2604	Open in IMG/M
3300026075\|Ga0207708_10105006	Not Available	2189	Open in IMG/M
3300026088\|Ga0207641_10211652	All Organisms → cellular organisms → Bacteria → Proteobacteria	1793	Open in IMG/M
3300026095\|Ga0207676_10062911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2945	Open in IMG/M
3300026095\|Ga0207676_11999274	Not Available	578	Open in IMG/M
3300026867\|Ga0207475_1004106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	841	Open in IMG/M
3300027907\|Ga0207428_10215953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1439	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	69.61%
Environmental	Environmental	30.39%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	69.61%
Terrestrial	Environmental → Terrestrial	30.39%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	44.12%
Soil	Environmental → Terrestrial → Soil	30.39%
Rhizoplane	Host-Associated → Plants → Rhizoplane	22.55%
Roots	Host-Associated → Plants → Roots	2.94%

Habitat	Taxonomy	Distribution
Soil	Host-Associated → Plants → Rhizosphere → Soil	24.51%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	21.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.61%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	18.63%
Loam	Environmental → Terrestrial → Soil → Loam	8.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.92%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.96%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	24.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	18.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	11.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	6.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.98%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	17.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	9.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	7.84%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	7.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	7.84%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	5.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	3.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002244	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300022886	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S079-202R-5	Environmental	Open in IMG/M
3300022889	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S096-311B-4	Environmental	Open in IMG/M
3300022899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S016-104C-6	Environmental	Open in IMG/M
3300022901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4	Environmental	Open in IMG/M
3300023062	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S081-202R-4	Environmental	Open in IMG/M
3300023069	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S049-202B-5	Environmental	Open in IMG/M
3300023073	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S154-409C-5	Environmental	Open in IMG/M
3300024275	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK15	Environmental	Open in IMG/M
3300024317	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK01	Environmental	Open in IMG/M
3300025290	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5	Host-Associated	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026867	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A5-12 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24742J22300_100093023	3300002244	Corn, Switchgrass And Miscanthus Rhizosphere	RPQRRDPAVKKKQRKPKHVLMREHRLRPMIREACRTGMVEAIEHCGNFWNVSDGFKKYIEHQIATEAEALMAAVRAVVREELTASKRKRK*
Ga0062594_1002007715	3300005093	Soil	VKKKQRKPKHVLMREHRLRPMIREACRTGMVEAIEHCGNFWNVSDGFKKYIEHQIATEAEALMAAVRAVVREELTASKRKRK*
Ga0062594_1012384221	3300005093	Soil	MAKKRRGRPPKPKPPKPIRVHEHKLRPMIREACRTGMVEAIEHCGNFWTVSDGFKKYIDQQVASQAEALIAAVRAVLRAELSLHEIASRRRRKP*
Ga0062594_1017436391	3300005093	Soil	MTKKRRGRPPKPKPRKPIRVREHMLRPMIREACKTGMVEAIEHCSNFWRVTDGYKKYIDHQVATETEVLLAAVKQTLREELDRAAGFLVRRGRRK*
Ga0065712_100784363	3300005290	Miscanthus Rhizosphere	VMAKKRRGRPPKPKPPKPIRVHEHKLRPMIREACRTGMVEAIEHCGNFWTVSDGFKKYIDQQVASQAEALIAAVRAVLRAELSLHEIASRRRRKP*
Ga0065712_100944313	3300005290	Miscanthus Rhizosphere	MKKAKRRGRPRKIKPPKPIRVHEHKLRPMIREACRTGMVEAIEHCSNFWSVADGYKKYIDDRITAESEALMAAVRAVLREPAVFEQRPRKRRKR*
Ga0065712_102257432	3300005290	Miscanthus Rhizosphere	MSKKRRGRPPKPKPPKPIRIREHKLRPMIREACRTGMVEAIEHTSNFWSVSDGYKKYIDHQIAAEAEALMTAVRAVVREELTASKRKQK*
Ga0065712_103394551	3300005290	Miscanthus Rhizosphere	MKKRRGRPPKPKPIRIHEHKLRPMIREACRTGMVEAIEHTSNFWSVTDGYKKYIDHQIAAEAEALMTAVRAVVREELTASKRKQK*
Ga0070690_1003205032	3300005330	Switchgrass Rhizosphere	MKKAKRRGRPHKVKPPKPIRVREHMLRPMIREACRTGMVEAIEHCSNFWSVGDGYKKYIDHQIKSQAEELMAAVKAALREAASPRKRTKR*
Ga0070670_1004273822	3300005331	Switchgrass Rhizosphere	MAKKRRGRPPKPKPPKPIRVLRPMIREACRTGMVEAIEHCSNFWSVADGYKKYIDHQIATEAEALLAAVRQTLREELAHSTTRRKRKR*
Ga0070666_100275907	3300005335	Switchgrass Rhizosphere	VKKKQRKPKHVLMREHRLRPMIREACHTGMVEAIEHCGNFWNVSDGFKKYIEHQIATEAEALMAAVRAVVREELTASKRKRK*
Ga0070666_112985792	3300005335	Switchgrass Rhizosphere	MSKKRRGRPPKPKPPKPILVQEHKLRPMIREACRTGMVEAIEHCSNFWSISDGYKKYINQQIEAQAEALMAAVKAALREARSTTRRKRKS*
Ga0070666_113705391	3300005335	Switchgrass Rhizosphere	PPKPKPPKPIRVHEHKLRPMIREACRTGMVEAIEHCSNFWSVADGYKKYIDHQVKSQTEALMAAVKTALREELATVRRKRKSS*
Ga0068868_1004855862	3300005338	Miscanthus Rhizosphere	KPPKPIRIREHKLRPMIREACKTGMVEAIEHTSNFWSVTDGYKKYIDHQIAAEAEALMTAVRAVVREELAASKRKRK*
Ga0068868_1010306942	3300005338	Miscanthus Rhizosphere	VKKKQRKPKHVLMREHRLRPMIREACRTGMVEAIEHCGNFWNVSDGFKKYIEHQIATEAEALMAAVRAVVREELTASKKRRKR*
Ga0070689_10005226810	3300005340	Switchgrass Rhizosphere	MKKRRGRPPKPKPIRIHEHKLRPMIREACRTGMVEAIEHTSNFWSVTDGYKKYIDHQIAAEAEALMTAVRAVVREELTASKRKRK*
Ga0070689_1002541271	3300005340	Switchgrass Rhizosphere	PIRVREHMLRPMIREACRTGMVEAIEHCSNFWSVGDGYKKYIDHQIKSQAEELMAAVKAALREAASPRKRTKR*
Ga0070689_1015253212	3300005340	Switchgrass Rhizosphere	MSKKRRGRPPKPKPPKPIRIREHKLRPMIREACKTGMVEAIEHTSNFWSVTDGYKKYIDHQIAAEAEALMTAVRAVVREELAASKRKRK*
Ga0070668_1015666141	3300005347	Switchgrass Rhizosphere	MAKKRRGRPPKPKPPKPIRVHEHKLRPMIREACRTGMVEAIEHCGNFWTVSDGFKKYIDQQVASQAEALIAAVRAVLRAELSLHEI
Ga0070675_1001635992	3300005354	Miscanthus Rhizosphere	MAKKRRGRPPKPKPPKPIRVHEHKLRPMIREACRTGMVEAIEHCHNFWTVSDGFKKYIDYQIKSQAEALMAAVKTALREATVRRKRRKP*
Ga0070675_1001635994	3300005354	Miscanthus Rhizosphere	MKKAKKRRGRPPKRKPTYMKRSERDALALRALIREACKTGMVEAIEHCSNFWRVTDGYKKYIDHQVATETEVLLAAVKQTLREELDRAAGFLVRRGRRK*
Ga0070671_1003435413	3300005355	Switchgrass Rhizosphere	MTKKRRGRPPKRKPTYMKRSERDALALRALIREACKTGMVEAIEHTSNFWSVTDGYKKYIDHQIATEAEALMAAVKAALREELDRASGNRQRRRKR*
Ga0070688_1002584031	3300005365	Switchgrass Rhizosphere	RPPKPKPRKPIRVREHMLRPMIREACKTGMVEAIEHCSNFWRVTDGYKKYIDHQVATETEVLLAAVKQTLREELDRAAGFLVRRGRRK*
Ga0070667_1014124122	3300005367	Switchgrass Rhizosphere	MTKKRRGRPPKRPKPIRVHEHNLRPMIREACRTGMVEAIEHTSNFWSVSDGYKKYIEHQISSQAEALIAAVRQTLREELARSTARRKRKS*
Ga0070672_1003329763	3300005543	Miscanthus Rhizosphere	IHEHKLRPMIREACRTGIVEAIEHCSNFWNVSDGYKKYIEHQISSQAEALIAAVRQTLREELARSTARRKRKS*
Ga0070672_1010223221	3300005543	Miscanthus Rhizosphere	ERRHTAMKKAKRRGRPHKVKPPKPIRVREHMLRPMIREACRTGMVEAIEHCSNFWSVGDGYKKYIDHQIKSQAEELMAAVKAALREAASPRKRTKR*
Ga0070665_10009161211	3300005548	Switchgrass Rhizosphere	VKKKQRKTKHVLMREHMLRPMIREACKTGMVEAIEHTSNFWSVTDGYKKYIDHQIATEAEALMAAVRAVVREELTASKKRRKR*
Ga0070665_1022623651	3300005548	Switchgrass Rhizosphere	RGRPPKPKPPKPIRVHEHKLRPMIREACRTGMVEAIEHCGNFWTVSDGFKKYIDQQVASQAEALIAAVRAVLRAELSLHEIASRRRRKP*
Ga0068859_1019775461	3300005617	Switchgrass Rhizosphere	VKKKQRKPKHVLMREHRLRPMIREACRTGMVEAIEHCGNFWNVSDGFKKYIEHQIATEAEALMAAVRAVVREELTASK
Ga0068864_1008884942	3300005618	Switchgrass Rhizosphere	VKKKQRKPKPPKPIRVHEHKLRPMIREACRTGMVEAIEHTSNFWSVTDGYKKYIDHQIAAEAEALMTAVRAVVREELTASKRKQK*
Ga0068864_1018888803	3300005618	Switchgrass Rhizosphere	MKRKPRKPKPPKPIRVHEHKLRPMIREACRTGMVEAIEHCSDFWSVSDGYRKYIDQQIELQSEALMAAVKQALREAAGPRRKRRKNDG*
Ga0068864_1025050642	3300005618	Switchgrass Rhizosphere	MAKKRRGRPPKPKPPKPIRVLRPMIREACRTGMVEAIEHCSNFWSVADGYKKYIDHQIATEAEALLAAVR
Ga0068863_1016504771	3300005841	Switchgrass Rhizosphere	KKRRGRPPKPKPRKPIRVREHMLRPMIREACKTGMVEAIEHCSNFWRVTDGYKKYIDHQVATETEVLLAAVKQTLREELDRAAGFLVRRGRRK*
Ga0075367_103616921	3300006178	Populus Endosphere	MKRKPRKPKPPKPIRVHEHKLRPMIREACRTGMVEAIEHCSDFWSVSDGYRKYIDQQIELQSEALMAAVKQALREAAGPRRKRRKN
Ga0097621_1008538363	3300006237	Miscanthus Rhizosphere	MAKKRRGRPPKPKPPKPIRVHEDKLRPMIREACRTGMVEAIEHCSNFWGVADGYKKYIDHQIATEAEALMAAVRQTLREELARSTARRKRKS*
Ga0075434_1025483872	3300006871	Populus Rhizosphere	MTKKRRGRPPKRPKPIRVHEHNLRPMIREACRTGMVEAIEHTSNFWNVSDGYKKYIEHQIATEAEALMAAVRAVVREELTASKRRKR*
Ga0075424_1010282462	3300006904	Populus Rhizosphere	MKKPRKVKPPKPIRVREHRLRPMIREACRTGMVEAIEHCSNFWSVSDGFKKYIEHQIATEAEALMAAVRAVVREELTASKRRKR*
Ga0111539_1003263812	3300009094	Populus Rhizosphere	PKPIRVQEHKLRPMIREACRTGMVEAIEHCGNFWTVSDGFKKYIDYQVKSQAEALMAAVRTALRDELTASRKRRK*
Ga0105245_131300121	3300009098	Miscanthus Rhizosphere	TAMKKAKRRGRPHKVKPPKPIRVREHMLRPMIREACRTGMVEAIEHCSNFWSVGDGYKKYIDHQIKSQAEELMAAVKAALREAASPRKRTKR*
Ga0105247_107084162	3300009101	Switchgrass Rhizosphere	KPKPPKPIRIREHKLRPMIREACKTGMVEAIEHTSNFWSVTDGYKKYIDHQIAAEAEALMTAVRAVVREELAASKRKRK*
Ga0111538_110840451	3300009156	Populus Rhizosphere	MAKKRRSRPPKPKLKFKPPKPIHVQEHKLRPMIREACRTGMVEAIEHCGNFWTVSDGFKKYIDYQVKSQAEALMAAVRTALRDELTASRKRRK*
Ga0111538_114098643	3300009156	Populus Rhizosphere	PKPIRVQEHMLRPMIREACKTGMVEAIEHTSNFWSVTDGYKKYIDHQIATEAEALMAAVRAVVREELTASKKRRKR*
Ga0111538_114162042	3300009156	Populus Rhizosphere	VKKKQRKPKPPKPIRVHEHKLRPMIREACRTGMVEAIEHTSNFWSVSDGYKKYIEHQISSQAEALIAAVRQTLREELARSTARRKRKS*
Ga0105248_125766442	3300009177	Switchgrass Rhizosphere	HTAMKKAKRRGRPHKVKPPKPIRVREHMLRPMIREACRTGMVEAIEHCSNFWSVGDGYKKYIDHQIKSQAEELMAAVKAALREAASPRKRTKR*
Ga0105249_100627181	3300009553	Switchgrass Rhizosphere	HERRDTAMTKKRRGRPPKPKPRKPIRVREHMLRPMIREACKTGMVEAIEHCSNFWRVTDGYKKYIDHQVATETEVLLAAVKQTLREELDRAAGFLVRRGRRK*
Ga0105249_105120723	3300009553	Switchgrass Rhizosphere	MKKAKRRGRPRKIKPPKPIRVHEHKLRPMIREACRTGMVEAIEHCSNFWSVADGYKKYIDARITAESEALMAAVRAVLREPAVFEQRPRRKYRKRRKR*
Ga0105249_106948525	3300009553	Switchgrass Rhizosphere	MTKKRRGRPPKPKPPKPIRIREHKLRPMIREACRTGMVEAIEHTSNFWSVSDGYKKYIDHQIAAEAEALMTAVRAVVREELTASKRK
Ga0134124_105231592	3300010397	Terrestrial Soil	VKKKQRKPKHILIREDKIRPLIREACKTGMVEAIEHTSNFWSVSDGYKKYIDHQIATEAEALMAAVRAVVREELTASKRKRK*
Ga0157309_100674652	3300012895	Soil	MKKRRGRPPKPKPIRIHEHKLRPMIREACRTGMVEAIEHTSNFWSVSDGYKKYIDHQIAAEAEALMTAVRAVVREELTASKRKQK*
Ga0157299_102486532	3300012899	Soil	MKKRRGRPPKPKPIRIHEHKLRPMIREACRTGMVEAIEHTSNFWSVTDGYKKYIDHQIAAEAEALMTAVRAVVREELAASKRKRK*
Ga0157299_102608421	3300012899	Soil	MTKKRRGRPPKPKPRKPIRVREHMLRPMIREACKTGMVEAIEHCSNFWRVTDGYKKYIDHQVATETEVLLAAVKQTLREE
Ga0157289_100214576	3300012903	Soil	MKKRRGRPPKPKPIRIHEHKLRPMIREACRTGMVEAIEHTSNFWSVTDGYKKYIDHQIAAEAEALMTAVRAVVREELTASK
Ga0157310_103870412	3300012916	Soil	MKKRRGRPPKPKPIRIHEHKLRPMIREACRTGMVEAIEHTSNFWSVTDGYKKYIDHQIAAEAEALMAAVKTALREELDRAAGALARKRRK*
Ga0163163_1005332713	3300014325	Switchgrass Rhizosphere	VKKKQRKPKHVLMREHRLRPMIREACRTGMVEAIEHCGNFWNVSDGFKKYIEHQIATEAEALMAAVRAVVRVELTASKRKRK*
Ga0157376_108467353	3300014969	Miscanthus Rhizosphere	MSKKRRGRPPKPKPPKPIRIREHKLRPMIREACKTGMVEAIEHTSNFWSVTDGYKKYIDHQIAAEAEALMTAVRAVVREELTASKRKRK*
Ga0173480_100979065	3300015200	Soil	MSKKRRGRPPKPKPPKPIRIHEHKLRPMIREACRTGMVEAIEHTSNFWSVTDGYKKYIDHQIAAEAEALMTAVRAVVREELTASKRKQK*
Ga0163161_113139702	3300017792	Switchgrass Rhizosphere	VHEHKLRPMIREACRTGMVEAIEHCGNFWTVSDGFKKYIDQQVASQAEALIAAVRAVLRAELSLHEIASRRRRKP
Ga0163161_114292232	3300017792	Switchgrass Rhizosphere	MKRKPRKPKPPKPIRVHEHKLRPMIREACRTGMVEAIEHCSDFWSVSDGYRKYIDQQIELQSEALMAAVKQALREAAGPRRKRRKNDG
Ga0247786_10293073	3300022883	Soil	MKKRRGRPPKPKPIRIHEHKLRPMIREACRTGMVEAIEHTSNFWSVTDGYKKYIDHQIAAEAEALMTAVRAVVREELAASKRKRK
Ga0247746_10200051	3300022886	Soil	MTKKRRGRPPKPKPRKPIRVREHMLRPMIREACKTGMVEAIEHCSNFWRVTDGYKKYIDHQVATETEVLLAAVKQTLREELDRAAGFL
Ga0247785_10465202	3300022889	Soil	MTKKRRGRPPKPKPPKPIRIREHKLRPMIREACRTGMVEAIEHCSNFWSVADGYKKYIDDRITAESEALMAAVK
Ga0247795_11074212	3300022899	Soil	RRGRPPKPKPIRIHEHKLRPMIREACRTGMVEAIEHTSNFWSVTDGYKKYIDHQIAAEAEALMTAVRAVVREELAASKRKRK
Ga0247788_10844293	3300022901	Soil	IRIHEHKLRPMIREACRTGMVEAIEHTSNFWSVTDGYKKYIDHQIAAEAEALMTAVRAVVREELAASKRKRK
Ga0247791_10108854	3300023062	Soil	MTKKRRGRPPKPKPRKPIRVREHMLRPMIREACKTGMVEAIEHCSNFWRVTDGYKKYIDHQVATETEVLLAAVKQTLREELDRAAGFLVRRGRRK
Ga0247751_10036673	3300023069	Soil	MKKRRGRPPKPKPIRIHEHKLRPMIREACRTGMVEAIEHTSNFWSVTDGYKKYIDHQIAAEAEALMTAVRAVVREELTASKRKQK
Ga0247744_10413222	3300023073	Soil	MKKAKKRRGRPPKPKPPKPIRVHEHKLRPMIREACRTGMVEAIEHCSNFWSVADGYKKYIDDRITAESEALMAAVRAVLREPAVFEQRPRTHRRKRRKP
Ga0247674_10357162	3300024275	Soil	MKRRKPPKPIRIHEHKLRPMIREACRTGMVEAIEHCNNFWSVSDGFKKYIDYQVKSQAEALMAAVKTALREEFARSTTRRKRKP
Ga0247660_10025199	3300024317	Soil	MSKKRRGRPPKRKPTYMKRSERDALALRALIREACKTGMVEAIEHTSNFWNVSDGFKKYIEHQIATEAEALMAAVRAVVREELTASKRKRK
Ga0207673_10088921	3300025290	Corn, Switchgrass And Miscanthus Rhizosphere	MAKKRRGRPPKPKPPKPIRVHEHKLRPMIREACRTGMVEAIEHCGNFWTVSDGFKKYIDQQVASQAEALIAAVRAVLRAELSLHEIASRRRRKP
Ga0207697_1000073110	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	VKKKQRKPKHVLMREHRLRPMIREACRTGMVEAIEHCGNFWNVSDGFKKYIEHQIATEAEALMAAVRAVVREELTASKRKRK
Ga0207697_100128935	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	VMAKKRRGRPPKPKPPKPIRVHEHKLRPMIREACRTGMVEAIEHCGNFWTVSDGFKKYIDQQVASQAEALIAAVRAVLRAELSLHEIASRRRRKP
Ga0207697_100340051	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MKKRRGRPPKPKPIRIHEHKLRPMIREACRTGMVEAIEHTSNFWSVTDGYKKYIDHQIAAEAEALMTAVRAV
Ga0207697_100836182	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MSKKRRGRPPKPKPPKPIRIREHKLRPMIREACKTGMVEAIEHTSNFWSVTDGYKKYIDHQIAAEAEALMTAVRAVVREELAASKRKRK
Ga0207680_100146317	3300025903	Switchgrass Rhizosphere	VKKKQRKPKHVLMREHRLRPMIREACHTGMVEAIEHCGNFWNVSDGFKKYIEHQIATEAEALMAAVRAVVREELTASKRKRK
Ga0207680_109707182	3300025903	Switchgrass Rhizosphere	MKKAKRRGRPHKVKPPKPIRVREHMLRPMIREACRTGMVEAIEHCSNFWSVGDGYKKYIDHQIKSQAEELMAAVKAALREAASPRKRTKR
Ga0207680_112348962	3300025903	Switchgrass Rhizosphere	MSKKRRGRPPKPKPPKPILVQEHKLRPMIREACRTGMVEAIEHCSNFWSISDGYKKYINQQIEAQAEALMAAVKAALREARSTTRRKRKS
Ga0207662_102186943	3300025918	Switchgrass Rhizosphere	MTKKRRGRPPKRPKPIRVHEHNLRPMIREACRTGMVEAIEHTSNFWSVTDGYKKYIDHQIATEAEALMAAVRAVVREELTASKKRRKR
Ga0207650_100302494	3300025925	Switchgrass Rhizosphere	VKKKQRKPKHVLMREHRLRPMIREVCRTGMVEAIEHCGNFWNVSDGFKKYIEHQIATEAEALMAAVRAVVREELTASKRKRK
Ga0207650_101945574	3300025925	Switchgrass Rhizosphere	VKKKQRKPKPPKPIRVHEHKLRPMIREACRTGMVEAIEHTSNFWSVTDGYKKYIDHQIAAEAEALMTAVRAVVREELTASKRKQK
Ga0207650_112574121	3300025925	Switchgrass Rhizosphere	TAMTKKRRGRPPKPKPRKPIRVREHMLRPMIREACKTGMVEAIEHCSNFWRVTDGYKKYIDHQVATETEVLLAAVKQTLREELDRAAGFLVRRGRRK
Ga0207650_113650032	3300025925	Switchgrass Rhizosphere	MAKKRRGRPPKPKPPKPIRVLRPMIREACRTGMVEAIEHCSNFWSVADGYKKYIDHQIATEAEALLAAVRQTLREELAHSTTRRKRKR
Ga0207659_101872283	3300025926	Miscanthus Rhizosphere	MKKAKKRRGRPPKRKPTYMKRSERDALALRALIREACKTGMVEAIEHCSNFWRVTDGYKKYIDHQVATETEVLLAAVKQTLREELDRAAGFLVRRGRRK
Ga0207701_104335073	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MKKRRGRPPKPKPIRIHEHKLRPMIREACRTGMVEAIEHTSNFWSVTDGYKKYIDHQIAAEAEALMTAVRAVVREELTASKRKRK
Ga0207644_105323132	3300025931	Switchgrass Rhizosphere	MTKKRRGRPPKRKPTYMKRSERDALALRALIREACKTGMVEAIEHTSNFWSVTDGYKKYIDHQIATEAEALMAAVKAALREELDRASGNRQRRRKR
Ga0207706_103234044	3300025933	Corn Rhizosphere	KPPKPIRVHEHKLRPMIREACRTGMVEAIEHCGNFWTVSDGFKKYIDQQVASQAEALIAAVRAVLRAELSLHEIASRRRRKP
Ga0207686_115568131	3300025934	Miscanthus Rhizosphere	QEAGSVMAKKRRGRPPKPKPPKPIRVHEHKLRPMIREACRTGMVEAIEHCGNFWTVSDGFKKYIDQQVASQAEALIAAVRAVLRAELSLHEIASRRRRKP
Ga0207670_100265451	3300025936	Switchgrass Rhizosphere	RHTAMKKAKRRGRPHKVKPPKPIRVREHMLRPMIREACRTGMVEAIEHCSNFWSVGDGYKKYIDHQIKSQAEELMAAVKAALREAASPRKRTKR
Ga0207670_100299891	3300025936	Switchgrass Rhizosphere	VKKKQRKPKHVLMREHRLRPMIREACRTGMVEAIEHCGNFWNVSDGFKKYIEHQIATEAEALMAAVRAVVKASA
Ga0207669_113168271	3300025937	Miscanthus Rhizosphere	IRVHEHNLRPMIREACRTGMVEAIEHTSNFWSVSDGYKKYIEHQISSQAEALIAAVRQTLREELARSTARRKRKS
Ga0207704_114292082	3300025938	Miscanthus Rhizosphere	MTKKRRGRPPKPKPRKPIRVREHMLRPMIREACKTGMVEAIEHCSNFWRVTDGYKKYIDHQVATETEVLLAAVKQTLREELDRGAGFLVRRGRRK
Ga0207711_101704626	3300025941	Switchgrass Rhizosphere	VKKKQRKPKPPKPIRVHEHKLRPMIREACRTGMVEAIEHTSNFWSVTDGYKKYIDHQIAAEAEALMTAVRAVVREELTASKRKRK
Ga0207711_102062642	3300025941	Switchgrass Rhizosphere	MTKKRRGRPPKRPKPIRVHEHNLRPMIREACRTGMVEAIEHTSNFWSVSDGYKKYIEHQISSQAEALIAAVRQTLREELARSTARRKRKS
Ga0207711_102104075	3300025941	Switchgrass Rhizosphere	MSKKRRGRPPKPKPPKPIRIREHKLRPMIREACRTGMVEAIEHTSNFWSVSDGYKKYIDHQIAAEAEALMTAVRAVVREELTASKRKQK
Ga0207711_115011492	3300025941	Switchgrass Rhizosphere	RRHTAMKKAKRRGRPHKVKPPKPIRVREHMLRPMIREACRTGMVEAIEHCSNFWSVGDGYKKYIDHQIKSQAEELMAAVKAALREAASPRKRTKR
Ga0207651_120164331	3300025960	Switchgrass Rhizosphere	RRRLGRRDTAMSKKRRGRPPKPKPPKPIRIREHKLRPMIREACKTGMVEAIEHTSNFWSVTDGYKKYIDHQIAAEAEALMTAVRAVVREELAASKRKRK
Ga0207712_100649077	3300025961	Switchgrass Rhizosphere	RGRPPKPKPRKPIRVREHMLRPMIREACKTGMVEAIEHCSNFWRVTDGYKKYIDHQVATETEVLLAAVKQTLREELDRAAGFLVRRGRRK
Ga0207708_101050067	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MSKKRRGRPPKPKPPKPIRIREHKLRPMIREACKTGMVEAIEHTSNFWSVTDGYKKYIDHQIATEAEALMAAVKAALREELDRASGNRQRRRKR
Ga0207641_102116523	3300026088	Switchgrass Rhizosphere	MTKKRRGRPPKRKPTYMKRSERDALALRALIREACKTGMVEAIEHTSNFWSVTDGYKKYIDHQIATEAEALMAAVRAVVREELTASKKRRKR
Ga0207676_100629111	3300026095	Switchgrass Rhizosphere	RPPKPKPPKPIRVQEHMLRPMIREACKTGMVEAIEHTSNFWSVTDGYKKYIDHQIATEAEALMAAVRAVVREELTASKKRRKR
Ga0207676_119992741	3300026095	Switchgrass Rhizosphere	MAKKRRGRPPKPKPPKPIRVLRPMIREACRTGMVEAIEHCSNFWSVADGYKKYIDHQIATEAEALLAAVRQTLREELAHS
Ga0207475_10041062	3300026867	Soil	RRGRPPKPKPIRIHEHKLRPMIREACRTGMVEAIEHTSNFWSVTDGYKKYIDHQIAAEAEALMTAVRAVVREELTASKRKQK
Ga0207428_102159531	3300027907	Populus Rhizosphere	SRPPKPKPPKPIRVQEHKLRPMIREACRTGMVEAIEHCGNFWTVSDGFKKYIDYQVKSQAEALMAAVRTALRDELTASRKRRK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101512

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences