Scaffold Ga0207697_10000731

Overview

Basic Information

• Taxon OID: 3300025315
• Scaffold ID: Ga0207697_10000731
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18636
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (91.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025065	Metagenome	203	N
F039688	Metagenome	163	Y
F095638	Metagenome	105	N
F101512	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207697_1000073110	F101512	GAG	VKKKQRKPKHVLMREHRLRPMIREACRTGMVEAIEHCGNFWNVSDGFKKYIEHQIATEAEALMAAVRAVVREELTASKRKRK
Ga0207697_1000073114	F025065	AGAAGG	MTPKQHFRALQIRLEIAEFGMGMPLDRERVKELREQVEQARQDAAEALVEAELARITSDGAE
Ga0207697_1000073123	F039688	GAGG	MKRYVIMAKENYPGATIKEICRCNSNPNDIRNALADYTVTGSLGTRIYKYNHIEILDVSPKKPREARAQMKKPMRNIHDHSGKPDANQILSVLQQVDAMRAGNGEQTPRATSEERPTLSQRQPEAEP
Ga0207697_1000073124	F095638	GAGG	MATEQQPGDRMPNYDHDYDGRPPVGWHDDDPLLERLCRYHPDLIPDALRARFRTDYARARAPAVAAALSLHPA