Scaffold Ga0208182_1002667

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1002667
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6983
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (91.30%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006867	Metagenome / Metatranscriptome	363	Y
F015346	Metagenome / Metatranscriptome	255	Y
F022282	Metagenome	215	Y
F062169	Metagenome / Metatranscriptome	131	N
F081210	Metagenome	114	N
F105878	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100266710	F015346	AGGA	MNPEYVSYKIGELVSANATKALGVVTRSNYWALDEYLGGETQFVDVLFGAHQSTQYPIEYLAKVK
Ga0208182_100266713	F105878	GGAG	MKVGQIIKINKSGLAQFAPVIRAKLEGEIGLVIQEKYDLSHKLDQDKLPERVKVYPSLVRFESLQNMNFLDMGAVMVFPDQAEVLS
Ga0208182_100266714	F006867	GAGG	MSVAKEIQKRCRIQPGMLVNSNAATEVNVIALVIGLSPSCKFDRDYEDADEHLFYQCEPIDGGQSFVDYVCNMEQIS
Ga0208182_100266715	F062169	AGGAG	MPVQEHIEKILGAVGQGALDAWYDAINEHPQNAMEIHDVVVEHLVENTFMY
Ga0208182_100266716	F022282	N/A	MSNPFRYQLGDLVNFEARRVTEEYIDETMLTGIVIKQRYVFTADNKFKVRTPDGDYWVRCDHLELISKGPKNKT
Ga0208182_100266720	F081210	AGG	MKPGDLVRQAPNIFSDREVAGKKMLVIKVIEGGSHRSETVLTLLEGKERTWHYGELELWRETR