Scaffold Ga0209674_100003

Overview

Basic Information

• Taxon OID: 3300025226
• Scaffold ID: Ga0209674_100003
• Source Dataset Name: Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2196646
• Total Scaffold Genes: 1969
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1324 (67.24%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Endophytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 35.6667
  • Long. (^o): -78.5097

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026918	Metagenome / Metatranscriptome	196	N
F027546	Metagenome / Metatranscriptome	194	Y
F033107	Metagenome / Metatranscriptome	178	Y
F036775	Metagenome / Metatranscriptome	169	Y
F040711	Metagenome / Metatranscriptome	161	Y
F047761	Metagenome / Metatranscriptome	149	Y
F049748	Metagenome / Metatranscriptome	146	Y
F055847	Metagenome / Metatranscriptome	138	Y
F058198	Metagenome / Metatranscriptome	135	Y
F077376	Metagenome / Metatranscriptome	117	Y
F080227	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209674_1000031479	F036775	AGGAGG	MYDQLDQMPAIDEIEDRPGQQRRRGMSDAVFYVSCCALALLPASLAAVLFHDLIGEPLLFLVAVVMITWVVTTVALVKIAGPLLRCRAIVAAGGLVSVAMCSLFLID
Ga0209674_1000031576	F040711	GAG	MTSDSSRDRLAAALGPEAQHVVMERGYSLGFVGVHGQVRLFQFRLSKKGFSQDAAADDAQFVGMLDEFTGVVTRMLTERWGGIALRAAFDAEGELIQRIYEVGTLKRCDEVDPVSPAQELVKDGERVGARELLVRASARLVENWGSFQPSFDHASNDAALTTKLQQLVSGAVG
Ga0209674_1000031745	F033107	GGAG	MRLLTSLALITIAYAALSRVNKVHTSRFAAKPQAKPEAVQTWEGEGGGLPSGGPGPGVKVEPKAVTDPDLAHGGV
Ga0209674_1000031767	F026918	N/A	MDSKQLFIEHLAGELQAMEVGRVPMNALRYRVHAKMLRKALDEATTPALLERQGGAHPQVVHALSNRFFEETGHLLQPNATAHKARSVLERTMASCRQARQK
Ga0209674_1000031965	F047761	AGG	MDVLTRLAAFIIAVLLAIDAFSAERTELLRVDGHARVSRWHRGDDFKLSFAGGRVESCSVGASAFDVLRDGDEVTVDSSRVFKSCDGIRRGGAVIKQANLHKWFMLIPMAILLAAALGWIRFERGYSDERRWFFG
Ga0209674_100003270	F027546	AGGAGG	MKVAGETEPEPWRPLGERITRQPPVKPEWQPLPHAPCIEVNRQGQLRTNLPLPK
Ga0209674_1000036	F058198	AGGAGG	MTELLLVSLVLVALAVRTFQVRHRIAAWECLWRFRSGPCTVELRRHAGLARLGHDSLEFPQPREFRIVSLRIGGIPVWSQQAIVSLPTDADSRIGAIPASEFDHLFDRHFRRAMPRQATRRLVVRAH
Ga0209674_100003646	F080227	GAGG	MNTRHLITSATLALAFFSSGAFAADEGCRTVANGVQICDVHTGHERSRDAVVADLQAKADTSTGCRTNANGVQICDVPTGRERSRESVVAEMSAAPAYKIEGCRTVANGVQKCDVPSATSRADTAVAAAH
Ga0209674_100003679	F049748	GAGG	MDIKQDPNAIPNFNSGGRLGEPQRNEPEQTQSSVELDPTAGGDGAASEAAEHESLGGEMVQPTGGIGGTGGADGRLDPTKTGPGAVDGLVGAP
Ga0209674_100003688	F077376	GGA	MTTYVLSLTGDEEKAANATHWATFRKAKLLSVSRNPRDRASARLAGRDSIVITGQGPIDPPDARHASLTRHPQALAALLVRTLDIQDGAGVVLADFDSDEFAADVVAEIAALGREVTCSGRAANFAFSAVV
Ga0209674_100003939	F055847	N/A	MNRRYAYRDYAILVTAQPSAGAAGWRPEICVIAPDDRWEFVPTHHSLVANDPQYCLELGRRCAESAIQSMDPAREKAGYRGLWH