NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1025161

Scaffold Ga0209337_1025161


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1025161 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3387
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051549Metagenome144Y
F072853Metagenome121Y
F089526Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209337_10251612F089526AGGMNLNKEQLNDVRHAVAYYMYHHVSISNPRYNDYEVILQVLSDIKEEK
Ga0209337_10251615F072853N/AMAASVSNIYAVLEGITQQVEELSTQDEVSPLLVWLLLRQQADYQLLLLNNPTV
Ga0209337_10251618F051549AGGMKYRIRYTDKTDYTQELIIEAPDVREAIDDALEKLPDHIVILSALQANL

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