Scaffold Ga0208919_1002159

Overview

Basic Information

• Taxon OID: 3300025128
• Scaffold ID: Ga0208919_1002159
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10536
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (88.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019030	Metagenome	232	Y
F059347	Metagenome	134	Y
F081754	Metagenome / Metatranscriptome	114	N
F092729	Metagenome	107	Y
F096074	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208919_100215912	F096074	GAG	MKKILGINSVVMNGIEKTTVTKITSEGVTLTGKKGKQSLTFPLKDAEKALDKGTWKVIDK
Ga0208919_100215920	F059347	AGG	MAKTYIVDIASVYGVDEKAADNLQVRPDSLNQEWLIDQVKKGAIYVCDVIEEDAGILE
Ga0208919_10021593	F092729	GAG	MASRRYQIQQKLKPLYEIRTRVGTQFSKAKEANDTETIEIWERVWKAVAKEIVALHDETYAINDKENGIVKS
Ga0208919_10021595	F019030	AGAAGG	VIEKQIDNGKTYSVQKSTLEAIGIELIIAQREYEKQLNMHTHLITGECELPEADKVFYEDAIAYLNGLIMHLNEATNNELLLI
Ga0208919_10021597	F081754	GGA	MDGRKATTQYGNTVTVLSWHLLPNGWEVWQLEGADPDGIFYGYTEGNESEFGLSSLKELESVNALCVQGKQLDELAAPIGWEWEKEISDFEKFALAIE