Scaffold Ga0207896_1004306

Overview

Basic Information

• Taxon OID: 3300025071
• Scaffold ID: Ga0207896_1004306
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2629
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae → Acidiferrobacter → unclassified Acidiferrobacter → Acidiferrobacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026158	Metagenome	199	Y
F050008	Metagenome	146	N
F052258	Metagenome	143	Y
F063169	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207896_10043062	F063169	AGG	MQSELIDEVLRHLDKFEKTGDWFHFSLALDALDDLKKQIESI
Ga0207896_10043066	F050008	AGG	MSQVNMDEAQRELVLDLAEKFAPFVKKVESGMALTRNHYGVYGSMIIRLSKGNRKLALMLSYALMMAGANGQGVSDAMGAFFPE
Ga0207896_10043068	F052258	N/A	MKKTKEQIANEHKLVNSEREEEAAMVLFACILGGVILIVLAIAMG
Ga0207896_10043069	F026158	AGAAGG	MLHISSTSESKASAVQCIEGFRDKMEMLMKAGDILDHCTGGRSTRQETADARARSLKIWKETGCNLSEAAEQGGADRGSFRIWLIKEGYHAARPYCKE