Scaffold Ga0208667_1023194

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1023194
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1181
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005743	Metagenome / Metatranscriptome	391	Y
F018266	Metagenome / Metatranscriptome	236	N
F080091	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_10231941	F018266	AGGAGG	VFRVILEGKFRENPINLSRAVKLLYNQDFTGSIRLENILWWKKYFLKVIHLRVLYPKTGYIQIVKIYRDKKPSIRVVTIPS
Ga0208667_10231942	F080091	GAGG	MTLKLWKLLSVRIKVEDNNGKIHWYDETDCESHNLGIEYDIEDIINKQGGTFDEEEVGKTKNT
Ga0208667_10231943	F005743	AGGAGG	MTRNLIVYKVDYANRHEDYNTHTGKFVRTKRIVMLSEEVNQTNGYWRNHSRVEKKFNKQMNGKEDSYYDNKYRILRVRKA