Scaffold Ga0244775_10133916

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10133916
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2096
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001562	Metagenome / Metatranscriptome	670	Y
F004431	Metagenome / Metatranscriptome	438	Y
F085708	Metagenome / Metatranscriptome	111	Y
F087194	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1013391610	F004431	AGAAG	MTITYTIWDGVNFLGFQTANSVDEMTKTVKDLQKISKNVVAHLRKVETN
Ga0244775_101339162	F001562	GGAG	MKKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFSIGLIEHEDYLAEMENE
Ga0244775_101339165	F085708	AGG	MNRLLTTLVQLGIAIPALIMGRMVWREIVADYREWANSH
Ga0244775_101339169	F087194	AGG	MTLEEYKQHVEAQRLASLAIALDALTKSNAIAKEMNK