NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10044152

Scaffold Ga0244775_10044152


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10044152 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3911
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (100.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005531Metagenome / Metatranscriptome397Y
F006744Metagenome / Metatranscriptome365Y
F008132Metagenome / Metatranscriptome338Y
F019325Metagenome / Metatranscriptome230Y
F038205Metagenome / Metatranscriptome166Y
F038643Metagenome / Metatranscriptome165Y
F103246Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1004415213F038643AGGMNTNNWAEFPFSVDGVNFVSKLDKEGSMYPQVNNMPVSIFNQMNQSAVRELIGKVSLMSQSEIQDELDRVNEGATQALICLA
Ga0244775_1004415217F103246AGGAMSRAITVKVATPKVIKALETKLAQIKKEYAEQGANEAKY
Ga0244775_100441522F019325AGGAGMTQLTETLFSTIVHEYHNGGVKSSYGLDAYTRKEVLAYLIRSKGCECINCL
Ga0244775_100441523F005531AGAAGMTITYSLWQGSQLLSVNNKANKPEEILAVIEELNKLGKGFSFIVREVEVNK
Ga0244775_100441524F008132GAGGMMTKWDTIQADVSDQYAHLAEEEMYENLMAEEEDVFGFTKAIQIDHLTDEQLDEVFNMFGDK
Ga0244775_100441528F006744AGGMNLEEFKAHVLATRQASKSEALSVLSATISTTERKEN
Ga0244775_100441529F038205AGGAMSDLKEIIAVACDECGGAGFLFWGDENNYDVEACECALDDWNI
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