Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10015313 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10015313 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7124
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (91.30%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

7124

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (91.30%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F000714	Metagenome / Metatranscriptome	924	Y
F001043	Metagenome / Metatranscriptome	794	Y
F031101	Metagenome	183	Y
F047059	Metagenome / Metatranscriptome	150	Y
F066789	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1001531312	F000263	AGG	MNSEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQDLADALEQEELSEEAMDSMVRTECEGRLDTLVALYELTYQLSFAIGARTL
Ga0244775_1001531313	F047059	AGGA	MTRSTHFMEYMKIHKISLEQDLEDARNNVPLTEDEYFESDAYYIGAIDTMEHILSVASDIMIDNERVY
Ga0244775_100153132	F031101	GGGGG	MNDLFWYSRQLKEAVSTTAMENGWNDEKCKEVFDQLMDKYLVDKDLK
Ga0244775_1001531321	F001043	GAGG	MSDYKDGFQDGYKFAREEIMEKLSEIDINDIDSWILDRFSEMIEGGIL
Ga0244775_1001531322	F000311	GAG	MYFELTAPSQVAFARAIWDAEIIGLDPEQCGPLTFNIGTGSIEKVSRIRDKYNLKESYWSDREATGYRG
Ga0244775_1001531323	F000714	N/A	TYKVIRGYSDAEYATDKVTSIEWDLHNGRQSQKQVNLYLSKIDTVKDIITEAYADSDDQETLRSIAEALGIALTRDVEWSATIEVSGTIQLDLLADSDTDVEQEIYDNLYVDSQNGNIEIVDQEVTNVREN
Ga0244775_100153133	F066789	AGGA	MSDAMCGKYGCDYQLDLDGQVTCANCGAMDDDASTPINIDNSVFERQIDFE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10015313

Overview

Ecosystem & Geography

Associated Families

Sequences