Scaffold Ga0244775_10014843

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10014843
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7250
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (88.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024314	Metagenome / Metatranscriptome	206	Y
F026557	Metagenome / Metatranscriptome	197	Y
F027847	Metagenome / Metatranscriptome	193	Y
F045756	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1001484312	F045756	AGGAG	MTKYNVLVSYVCEANDELSAVFALNKTLMPLSENELEKFNAFHVEVVPQ
Ga0244775_1001484315	F026557	AGGCGG	MINSVLSIPCDECNSTGLIFFGNDYDYDVETCECDFGIEQDLQQFNN
Ga0244775_100148435	F024314	AGG	MSNTEETLTAEQAQAVLLFQIEQKLRQHIALQVESKFHGMYHNASHDIAQYIRNMS
Ga0244775_100148438	F027847	AGTAGG	MNPFTYAIDWLEDNADYAPIGAFIGLGIALVLAFTLGA